Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QMY49_RS00085 Genome accession   NZ_CP125875
Coordinates   25378..26022 (-) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain SB1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 20378..31022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY49_RS00075 (QMY49_00075) uvrA 21384..24206 (-) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -
  QMY49_RS00080 (QMY49_00080) galU 24344..25216 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QMY49_RS00085 (QMY49_00085) qstR 25378..26022 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  QMY49_RS00090 (QMY49_00090) ssb 26317..26856 (+) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  QMY49_RS00095 (QMY49_00095) csrD 27108..29117 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  QMY49_RS00100 (QMY49_00100) - 29129..30577 (+) 1449 WP_005444325.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=833217 QMY49_RS00085 WP_009698824.1 25378..26022(-) (qstR) [Vibrio harveyi strain SB1]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=833217 QMY49_RS00085 WP_009698824.1 25378..26022(-) (qstR) [Vibrio harveyi strain SB1]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTAATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGCGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACCTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523