Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U0N78_RS08655 Genome accession   NZ_CP140109
Coordinates   1835794..1836288 (-) Length   164 a.a.
NCBI ID   WP_043027279.1    Uniprot ID   -
Organism   Streptococcus suis strain 2022WUSS148     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1830794..1841288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0N78_RS08635 (U0N78_08635) - 1833033..1833977 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  U0N78_RS08640 (U0N78_08640) - 1833993..1834649 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  U0N78_RS08645 (U0N78_08645) tnpA 1834787..1835144 (-) 358 Protein_1667 IS200/IS605 family transposase -
  U0N78_RS08650 (U0N78_08650) rpsR 1835522..1835761 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  U0N78_RS08655 (U0N78_08655) ssbA 1835794..1836288 (-) 495 WP_043027279.1 single-stranded DNA-binding protein Machinery gene
  U0N78_RS08660 (U0N78_08660) rpsF 1836300..1836590 (-) 291 WP_256769145.1 30S ribosomal protein S6 -
  U0N78_RS08665 (U0N78_08665) - 1836762..1837751 (-) 990 WP_043027278.1 lipoate--protein ligase -
  U0N78_RS08670 (U0N78_08670) lpdA 1837852..1839612 (-) 1761 WP_043027277.1 dihydrolipoyl dehydrogenase -
  U0N78_RS08675 (U0N78_08675) - 1839882..1841270 (-) 1389 WP_043027280.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18132.89 Da        Isoelectric Point: 4.7294

>NTDB_id=833166 U0N78_RS08655 WP_043027279.1 1835794..1836288(-) (ssbA) [Streptococcus suis strain 2022WUSS148]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGTLIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=833166 U0N78_RS08655 WP_043027279.1 1835794..1836288(-) (ssbA) [Streptococcus suis strain 2022WUSS148]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTACTCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366