Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QM316_RS02480 Genome accession   NZ_CP125862
Coordinates   460029..460475 (+) Length   148 a.a.
NCBI ID   WP_151367112.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 18-02202-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455029..465475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM316_RS02445 (QM316_02440) - 455523..455726 (+) 204 WP_000087561.1 YqgQ family protein -
  QM316_RS02450 (QM316_02445) - 455723..456709 (+) 987 WP_000161315.1 ROK family glucokinase -
  QM316_RS02455 (QM316_02450) - 456709..457038 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QM316_RS02460 (QM316_02455) - 457035..457658 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QM316_RS02465 (QM316_02460) comGA 457710..458684 (+) 975 WP_000697222.1 competence type IV pilus ATPase ComGA Machinery gene
  QM316_RS02470 (QM316_02465) comGB 458656..459726 (+) 1071 WP_000776413.1 competence type IV pilus assembly protein ComGB Machinery gene
  QM316_RS02475 (QM316_02470) comGC 459740..460051 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QM316_RS02480 (QM316_02475) comGD 460029..460475 (+) 447 WP_151367112.1 competence type IV pilus minor pilin ComGD Machinery gene
  QM316_RS02485 (QM316_02480) comGE 460462..460761 (+) 300 WP_000844415.1 hypothetical protein Machinery gene
  QM316_RS02490 (QM316_02485) comGF 460679..461176 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  QM316_RS02495 (QM316_02490) - 461273..461419 (+) 147 WP_001789879.1 hypothetical protein -
  QM316_RS02500 (QM316_02495) - 461409..461933 (+) 525 WP_001015120.1 shikimate kinase -
  QM316_RS02505 (QM316_02500) gcvT 462092..463183 (+) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  QM316_RS02510 (QM316_02505) gcvPA 463203..464549 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17193.38 Da        Isoelectric Point: 10.3312

>NTDB_id=833100 QM316_RS02480 WP_151367112.1 460029..460475(+) (comGD) [Staphylococcus aureus strain 18-02202-1]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYFKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIVFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=833100 QM316_RS02480 WP_151367112.1 460029..460475(+) (comGD) [Staphylococcus aureus strain 18-02202-1]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATTTTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGTCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

97.973

100

0.98
  comGD Staphylococcus aureus N315

97.973

100

0.98