Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   I3F59_RS05455 Genome accession   NZ_CP140097
Coordinates   1236862..1239009 (-) Length   715 a.a.
NCBI ID   WP_240139113.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1231862..1244009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS05435 (I3F59_005435) - 1231910..1232650 (-) 741 WP_240135893.1 alpha/beta fold hydrolase -
  I3F59_RS05440 (I3F59_005440) - 1232779..1233768 (-) 990 WP_240135894.1 TerC family protein -
  I3F59_RS05445 (I3F59_005445) - 1234020..1235999 (-) 1980 WP_330113767.1 TerD family protein -
  I3F59_RS05450 (I3F59_005450) - 1236152..1236730 (-) 579 WP_240139114.1 TerD family protein -
  I3F59_RS05455 (I3F59_005455) uvrB 1236862..1239009 (-) 2148 WP_240139113.1 excinuclease ABC subunit UvrB Machinery gene
  I3F59_RS05460 (I3F59_005460) - 1239070..1239942 (-) 873 WP_240139112.1 MHYT domain-containing protein -
  I3F59_RS05465 (I3F59_005465) - 1240390..1241214 (+) 825 WP_240139120.1 glycerophosphodiester phosphodiesterase family protein -
  I3F59_RS05470 (I3F59_005470) - 1241264..1241818 (+) 555 WP_240139111.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  I3F59_RS05475 (I3F59_005475) - 1242056..1243357 (+) 1302 WP_240139119.1 MFS transporter -
  I3F59_RS05480 (I3F59_005480) - 1243370..1243732 (-) 363 WP_240139110.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 80300.92 Da        Isoelectric Point: 4.6589

>NTDB_id=833040 I3F59_RS05455 WP_240139113.1 1236862..1239009(-) (uvrB) [Streptomyces sp. MUM 178J]
MRPVTQIERTVAPFEVVSPYRPSGDQPTAIADLERRIRAGEEDVVLLGATGTGKSATTAWMIERLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKIGDEIDRDQLLRRFVDIQYTRNDTAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EILSDDQSLYVFPASHYVAGPERMERAINGIERELEERLAELDKQGKLLESQRLRMRTSYDIEMMRQIGSCSGIENYSMH
FDDRSPGSPPNTLLDYFPEDFLLVVDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGPYELARSDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMAEDLTDYFLELGVQV
RYLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMEKAIEETNRRRAKQIAYNTERGIDPQPLRKKINDIVATIAREEVDTEELLGTGYRQVKEGKAGKGVKAPVPA
LGAPGTGAAGSTKAETAGVALTDRPATELAGIIEEMTERMRAAAAELQFEVAARLRDEVSELKKELRQMKEAGLA

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=833040 I3F59_RS05455 WP_240139113.1 1236862..1239009(-) (uvrB) [Streptomyces sp. MUM 178J]
ATGCGGCCCGTTACCCAGATCGAACGTACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCGGCCCAGCGGCGACCAGCC
GACGGCCATCGCCGACCTCGAGCGGCGTATCCGCGCGGGTGAGGAGGACGTCGTCCTGCTCGGCGCGACCGGCACGGGCA
AGTCGGCGACGACCGCCTGGATGATCGAGCGGCTTCAGCGCCCGACCCTGGTGATGGCGCCCAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAGCTCCTGCCCAACAACGCCGTCGAGTACTTCGTCTCCTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTATATCGAGAAGGACTCCTCGATCAACGAAGAGGTGGAGCGGCTGCGGCACT
CGGCGACGAACTCCCTGCTCACCCGCCGGGACGTGGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTGGGCACTCCG
CAGGAGTACGTGGACCGGATGGTTCCGCTCAAGATCGGGGACGAGATCGACCGGGACCAGCTGCTGCGGCGCTTCGTCGA
CATCCAGTACACGCGCAACGACACCGCGTTCACCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACCCTCCATCCGCTCACCGGC
GAGATCCTCAGCGACGACCAGTCGCTCTACGTCTTCCCGGCCAGCCACTACGTCGCGGGCCCGGAGCGCATGGAGAGGGC
GATCAACGGCATCGAGCGGGAGCTCGAGGAGCGCCTCGCGGAGCTCGACAAACAGGGCAAGCTGCTGGAGTCCCAACGGC
TGCGCATGCGCACCTCTTACGACATCGAGATGATGCGCCAGATCGGCTCCTGCTCCGGCATCGAGAACTACTCCATGCAC
TTCGACGACCGCTCGCCCGGCTCCCCGCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTCCTCGTCGTCGACGA
GTCGCATGTCACCGTGCCCCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGGACGCTGGTCGACCATGGCT
TCCGGCTGCCCTCCGCCCTCGACAACCGTCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAAACCGTCTATCTG
TCCGCCACGCCCGGCCCTTACGAGCTCGCCCGCTCCGACGGCTTCGTCGAGCAGATCATCCGTCCGACCGGCCTGGTGGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGGGAGCGCACCGAGAAGGACG
AGCGCGTACTGGTCACCACGCTGACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTCGAGCTGGGCGTCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGGGTGGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTTCGACGTCCT
CGTCGGCATCAACCTCCTCCGCGAGGGTCTCGACCTCCCCGAGGTGTCGCTGGTCGCCATCCTCGACGCCGACAAGGAAG
GCTTTCTGCGCTCCGGCACTTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCATATGTAC
GCCGACAAGGTCACCCCGGCGATGGAGAAGGCCATCGAGGAGACCAACCGCCGCCGCGCCAAGCAGATCGCGTACAACAC
CGAGCGGGGAATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCCACCATCGCCCGCGAAGAGGTCGACA
CCGAGGAACTGCTCGGCACCGGCTACCGGCAGGTCAAGGAAGGCAAGGCCGGCAAGGGCGTCAAAGCGCCGGTTCCGGCC
CTCGGCGCACCCGGCACGGGCGCGGCCGGTTCCACCAAGGCCGAGACGGCCGGCGTCGCGCTCACCGACCGGCCCGCGAC
CGAACTGGCCGGGATCATCGAGGAGATGACCGAGCGTATGCGCGCGGCCGCCGCCGAGCTGCAGTTCGAGGTGGCGGCTC
GGCTGCGCGACGAGGTGAGCGAGTTGAAGAAGGAGCTCAGGCAGATGAAGGAGGCGGGCCTCGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(673-705)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.006

96.643

0.541
  uvrB Streptococcus pneumoniae R6

56.006

96.643

0.541
  uvrB Streptococcus pneumoniae D39

56.006

96.643

0.541