Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QMY17_RS09450 Genome accession   NZ_CP125812
Coordinates   1782490..1782825 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain N3378-3At     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777490..1787825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS09400 comGC 1777509..1777805 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QMY17_RS09405 comGD 1777795..1778226 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  QMY17_RS09410 comGE 1778210..1778557 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  QMY17_RS09415 comGF 1778583..1778966 (+) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  QMY17_RS09420 comGG 1778967..1779341 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  QMY17_RS09425 spoIITA 1779412..1779591 (+) 180 WP_014480252.1 YqzE family protein -
  QMY17_RS09430 yqzG 1779633..1779959 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  QMY17_RS09435 tapA 1780231..1780992 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  QMY17_RS09440 sipW 1780976..1781548 (+) 573 WP_003230181.1 signal peptidase I SipW -
  QMY17_RS09445 tasA 1781612..1782397 (+) 786 WP_014480250.1 biofilm matrix protein TasA -
  QMY17_RS09450 sinR 1782490..1782825 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QMY17_RS09455 sinI 1782859..1783032 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  QMY17_RS09460 yqhG 1783215..1784009 (-) 795 WP_014480249.1 YqhG family protein -
  QMY17_RS09465 hepAA 1784030..1785703 (-) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  QMY17_RS09470 gcvT 1786145..1787233 (+) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=832944 QMY17_RS09450 WP_003226345.1 1782490..1782825(-) (sinR) [Bacillus subtilis strain N3378-3At]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=832944 QMY17_RS09450 WP_003226345.1 1782490..1782825(-) (sinR) [Bacillus subtilis strain N3378-3At]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1