Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   U0027_RS13260 Genome accession   NZ_CP139997
Coordinates   2699511..2701319 (+) Length   602 a.a.
NCBI ID   WP_020812784.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain HAMBI 105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2694511..2706319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0027_RS13260 (U0027_13255) recQ 2699511..2701319 (+) 1809 WP_020812784.1 DNA helicase RecQ Machinery gene
  U0027_RS13265 (U0027_13260) - 2701378..2702610 (-) 1233 WP_020812785.1 ROK family transcriptional regulator -
  U0027_RS13270 (U0027_13265) - 2702874..2703896 (+) 1023 WP_003507133.1 sugar ABC transporter substrate-binding protein -
  U0027_RS13275 (U0027_13270) - 2704125..2705207 (+) 1083 WP_003507134.1 ABC transporter permease -
  U0027_RS13280 (U0027_13275) - 2705207..2705989 (+) 783 WP_020812786.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67091.81 Da        Isoelectric Point: 6.4514

>NTDB_id=832943 U0027_RS13260 WP_020812784.1 2699511..2701319(+) (recQ) [Agrobacterium tumefaciens strain HAMBI 105]
MTDDPLHILKTVYGYDVFRGRQAEIIRHVVAGNNAFVLMPTGGGKSLCYQIPALARDGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWRDMRAGKVDILYAAPETLLKPDVLDALQPIALSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADGPTRTEILGHLGIEEDDAFIAGFDRPNIRYAILEKDNPRAQLKRFLKDRDGESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETASCRRQVLLSYFGDRCQPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRMIEVDLSG
HGGLSISEDGRRFLREKPALMLRIPSAPRSARQQTPRNTVSTILPEADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELATAKPVSAKEMAGIPGVGDTKLERYGPAFLAAIMQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=832943 U0027_RS13260 WP_020812784.1 2699511..2701319(+) (recQ) [Agrobacterium tumefaciens strain HAMBI 105]
GTGACCGATGATCCCTTGCATATACTCAAGACCGTCTATGGCTACGATGTGTTTCGCGGGCGGCAGGCCGAAATCATCCG
GCATGTGGTGGCGGGCAATAATGCTTTCGTTCTGATGCCGACAGGTGGTGGCAAGTCGCTTTGTTACCAGATTCCAGCGC
TTGCGCGCGACGGCATGGGGCTGATCGTCTCGCCGCTCATCGCGCTGATGGTAGATCAGGTCGCTGCCCTGCGTCAGGCA
GGCGTGCGGGCCGAGGCTCTCAATTCCGATCTTTCTCCGGAAGAGCGGCGTGCGCTTTGGCGGGATATGCGGGCAGGCAA
AGTGGATATTCTTTATGCCGCACCGGAAACCCTTCTCAAACCGGATGTCCTGGACGCTCTCCAGCCCATTGCCCTGTCGT
TGATCGCTATCGACGAAGCCCATTGTCTGTCTCAATGGGGGCATGATTTCCGGCCACCCTACCGCCAGCTTGATACGCTG
ATCGAGCGTTTTCCCGACACGCCACGCATGGCGCTGACAGCAACGGCCGACGGCCCCACGCGCACCGAAATTCTCGGTCA
CCTCGGAATTGAAGAGGACGACGCCTTCATCGCCGGGTTCGATAGGCCCAATATCCGCTATGCGATCTTGGAAAAGGATA
ATCCACGCGCGCAGTTGAAGCGCTTTCTGAAGGACCGCGACGGTGAAAGCGGCATCGTCTATTGCCTTTCCAAACGAAAG
GTGGATGAAACGGCCGCATGGCTGCGGGAGGAGGGGCGCGACGCGCTGCCCTATCACGCTGGCATGGACAAGGCGGCCCG
CGAGGAGAACCAGACCCGTTTCCAGCACGGCGAGGCGGTCATCATTGTCGCGACCGTCGCTTTTGGCATGGGTATAGACA
AGCCCGATGTGCGCTTTGTGGTTCATATCGATTTGCCCGGCAGCATCGAGGCCTATTATCAGGAAACGGGCCGAGCCGGC
CGCGACGGCCTGCCGTCGGACGTACTCATGCTCTATGGCTACGAAGATATTGCCCTGCGTAATCGTTTCATCGAAGAGTC
TGATGCCGCGGACCAGCGCAAATATATGGAGCGCCAGAAGCTCGATGCGCTGCTCGGCCTTGCGGAAACCGCGAGTTGCC
GCAGGCAGGTTCTGCTGTCCTATTTCGGCGACCGGTGTCAGCCCTGCGGTAATTGCGATACCTGCGCCGAGCCGCCGGAC
CTGTTTGACGGGGCCATCGCCGCACAGAAGCTTCTGTCCTGTATTTATCGCACCGGTGAACGTTTTGGCCAAGCCTATGT
CATCCGTGTGTTGCTGGGGGTCGAGGATGAGCGGATTTCCCGCTTCGGACATGATCGCATCACGACATACGGTATAGGTA
AAGAACATGACAATCGCACCTGGCGCGCCATTCTGCGTCAACTGGTTGCGTTACGCATGATTGAAGTGGATCTGTCCGGG
CATGGTGGTCTGTCCATTTCCGAAGATGGACGGCGGTTCCTGCGCGAAAAACCTGCGTTGATGCTGAGGATACCATCTGC
TCCGCGTTCTGCCCGGCAACAGACGCCCCGCAACACGGTATCGACGATTTTGCCTGAAGCTGATCGCAGTCTTTTTGAGG
CTCTGCGTGCGAAGCGCATGGAAATTGCCCGTGCGCAGAACGTTCCGCCCTATGTGATTTTCCATGACAAGACCCTGATA
GAACTTGCCACGGCAAAACCGGTCTCCGCAAAGGAAATGGCTGGGATTCCCGGCGTCGGAGACACCAAGCTGGAGCGCTA
CGGGCCAGCCTTTCTGGCGGCGATCATGCAGCACGCCGCTGGCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(218-322)

RQC domain (RQC)

(398-509)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

DEAD/DEAH box helicase (DEAD)

(22-177)

HRDC domain (HRDC)

(530-595)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.584

99.003

0.372