Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QMY17_RS08945 Genome accession   NZ_CP125812
Coordinates   1695383..1696000 (+) Length   205 a.a.
NCBI ID   WP_014480312.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690383..1701000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS08910 aroE 1691041..1691883 (+) 843 WP_014480317.1 shikimate dehydrogenase -
  QMY17_RS08915 yhbY 1691877..1692167 (+) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  QMY17_RS08920 nadD 1692179..1692748 (+) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  QMY17_RS08925 yqeK 1692738..1693298 (+) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QMY17_RS08930 rsfS 1693316..1693672 (+) 357 WP_014480315.1 ribosome silencing factor -
  QMY17_RS08935 yqeM 1693669..1694412 (+) 744 WP_014480314.1 class I SAM-dependent DNA methyltransferase -
  QMY17_RS08940 comER 1694478..1695299 (-) 822 WP_014480313.1 late competence protein ComER -
  QMY17_RS08945 comEA 1695383..1696000 (+) 618 WP_014480312.1 competence protein ComEA Machinery gene
  QMY17_RS08950 comEB 1696067..1696636 (+) 570 WP_003229978.1 ComE operon protein 2 -
  QMY17_RS08955 comEC 1696640..1698970 (+) 2331 WP_033881047.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMY17_RS08960 yqzM 1699010..1699144 (-) 135 WP_003229983.1 YqzM family protein -
  QMY17_RS08965 - 1699185..1699334 (+) 150 WP_003229985.1 hypothetical protein -
  QMY17_RS08970 holA 1699374..1700417 (+) 1044 WP_014480310.1 DNA polymerase III subunit delta -
  QMY17_RS08975 rpsT 1700432..1700698 (-) 267 WP_003229989.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21781.51 Da        Isoelectric Point: 4.7220

>NTDB_id=832933 QMY17_RS08945 WP_014480312.1 1695383..1696000(+) (comEA) [Bacillus subtilis strain N3378-3At]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEEIAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=832933 QMY17_RS08945 WP_014480312.1 1695383..1696000(+) (comEA) [Bacillus subtilis strain N3378-3At]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAATAGCAGTGCAGCAAGGTGGCGGAGGGTCAG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

99.512

100

0.995
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39