Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   U0027_RS08375 Genome accession   NZ_CP139997
Coordinates   1648808..1651774 (+) Length   988 a.a.
NCBI ID   WP_077998923.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain HAMBI 105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1643808..1656774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0027_RS08340 (U0027_08335) - 1644018..1644422 (+) 405 WP_003507644.1 DUF2946 family protein -
  U0027_RS08345 (U0027_08340) - 1644470..1645834 (+) 1365 WP_060726372.1 PepSY-associated TM helix domain-containing protein -
  U0027_RS08350 (U0027_08345) - 1645903..1646379 (-) 477 WP_003507634.1 nuclear transport factor 2 family protein -
  U0027_RS08355 (U0027_08350) - 1646392..1647003 (-) 612 WP_080864212.1 NAD(P)-dependent oxidoreductase -
  U0027_RS08360 (U0027_08355) - 1647158..1647541 (+) 384 WP_003507622.1 winged helix-turn-helix transcriptional regulator -
  U0027_RS08365 (U0027_08360) - 1647659..1648081 (-) 423 WP_077998890.1 GNAT family N-acetyltransferase -
  U0027_RS08370 (U0027_08365) - 1648188..1648541 (-) 354 WP_020009373.1 DMT family protein -
  U0027_RS08375 (U0027_08370) uvrB 1648808..1651774 (+) 2967 WP_077998923.1 excinuclease ABC subunit UvrB Machinery gene
  U0027_RS08380 (U0027_08375) - 1651794..1652327 (-) 534 WP_223564864.1 hypothetical protein -
  U0027_RS08385 (U0027_08380) - 1652584..1653552 (+) 969 WP_060723337.1 alpha/beta hydrolase -
  U0027_RS08390 (U0027_08385) - 1653581..1654006 (-) 426 WP_060726376.1 DUF1801 domain-containing protein -
  U0027_RS08395 (U0027_08390) - 1654170..1654625 (+) 456 WP_060723339.1 PRC-barrel domain-containing protein -
  U0027_RS08400 (U0027_08395) - 1654784..1655392 (+) 609 WP_060726377.1 DUF922 domain-containing Zn-dependent protease -
  U0027_RS08405 (U0027_08400) - 1655400..1656002 (-) 603 WP_060723341.1 J domain-containing protein -
  U0027_RS08410 (U0027_08405) - 1656398..1656751 (+) 354 WP_003507612.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 988 a.a.        Molecular weight: 108580.08 Da        Isoelectric Point: 5.7272

>NTDB_id=832929 U0027_RS08375 WP_077998923.1 1648808..1651774(+) (uvrB) [Agrobacterium tumefaciens strain HAMBI 105]
MARSPKNSTSSPSGFEEAPQSSFEGAPLSGSVSDWVKQLEAEAEASSVETQREIASKAGKHRKKIEIEARKDAEKAASKT
AKNTTASKTARGVSIGASSDPKTRAAAGLNPVAGMDVSLEDAANLAPGAVTATVDALSKLIESGNPLFKDGKLWTPHRPA
RPPKSEGGVTIRMASDYQPAGDQPTAINDLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLY
SEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETY
TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQK
TGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDVEMLEATGSCAGIENYSRYLT
GRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDAMRPLTVAVSA
TPGSWEMEQAGGVFAEQVIRPTGLIDPPVEVRAARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVR
YMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYA
DNITGSMKRAMEETSRRREKQVAYNAEHGITPESVKAKISDILDSVYERDHVRADISGASGKGFADGGHLVGNNLQSHLN
ALEKSMRDAAADLDFEKAARLRDEIKRLKAAELATMDDPMAKEEARAIEGGGKNNRRSHLSISPPEGETSGRTEAGAAPN
ESGKSLFTKPSLDEMGPGSDAGKPLFRRNTLDEMTVGRTEKPVRSAVPDKPETESGKRFSPLMEGQPERATDDPRPLVRG
KIGAGSYEDAGEQKRKSRTKNKTGRPGR

Nucleotide


Download         Length: 2967 bp        

>NTDB_id=832929 U0027_RS08375 WP_077998923.1 1648808..1651774(+) (uvrB) [Agrobacterium tumefaciens strain HAMBI 105]
ATGGCCAGATCACCGAAAAACTCCACCTCCTCGCCCTCGGGCTTCGAGGAAGCTCCGCAATCGTCATTCGAAGGTGCGCC
GCTCAGCGGCAGCGTCTCCGATTGGGTGAAGCAGCTTGAGGCGGAAGCGGAGGCATCCTCCGTGGAAACCCAGCGCGAAA
TCGCCTCGAAGGCGGGCAAGCACCGCAAGAAGATCGAGATCGAAGCGCGCAAGGACGCGGAGAAGGCCGCCTCGAAGACG
GCCAAGAACACCACGGCCTCCAAGACCGCGCGCGGTGTTTCCATCGGCGCATCGAGCGATCCGAAAACCCGCGCCGCCGC
CGGCCTCAATCCGGTCGCCGGTATGGACGTATCGCTGGAGGATGCCGCCAACCTCGCGCCGGGTGCCGTCACCGCAACGG
TGGACGCGCTGTCGAAGCTGATCGAGAGCGGCAATCCGCTGTTCAAGGACGGCAAGCTGTGGACGCCGCACCGCCCGGCC
CGGCCGCCGAAGTCCGAAGGCGGCGTTACCATCCGCATGGCCTCGGACTATCAGCCCGCAGGCGACCAGCCGACGGCCAT
CAACGACCTCGTGGAAGGCATCAATTCCGGCGAGCGCAGCCAGGTCCTGCTCGGCGTCACCGGCTCCGGCAAGACCTTCA
CCATGGCCAAGGTAATTGAGGCGACGCAGCGCCCGGCTGTCATTCTCGCGCCTAACAAGACGCTGGCCGCGCAGCTCTAT
TCGGAGTTCAAGAACTTCTTCCCCGACAATGCGGTGGAATATTTCGTCTCCTACTACGATTATTACCAGCCGGAAGCCTA
TGTGCCGCGCTCCGACACCTTCATCGAGAAAGAATCCTCGATCAACGAGCAGATCGACCGGATGCGCCACTCCGCCACTC
GCTCACTGCTGGAGCGCGACGACTGCATCATCGTCGCCTCGGTTTCCTGCATCTACGGTATCGGTTCGGTGGAGACCTAC
ACCGCCATGACGTTCCAGATGCAGGTGGGCGACCGGCTGGACCAGCGCCAGCTTCTGGCCGACCTCGTGGCCCAGCAATA
CAAGCGCCGCGACATGGATTTCCAGCGCGGCTCGTTCCGCGTGCGCGGTGACACCATCGAAATCTTCCCTGCCCACCTTG
AAGATGCCGCCTGGCGTATCTCGATGTTCGGCGACGAGATCGATTCCATCACCGAATTCGACCCGCTGACCGGCCAGAAA
ACCGGCGACCTGCAATCCGTCAAGATCTACGCCAATTCGCACTATGTTACCCCGCGCCCGACGCTGAACGGCGCGATCAA
GTCGATCAAGGAAGAGCTGAAGGTCCGCCTCGCCGAACTGGAAAAGGCCGGACGCCTGCTGGAAGCCCAGCGGCTGGAGC
AGCGCACCCGCTATGACGTGGAAATGCTGGAGGCGACCGGCTCCTGCGCCGGCATCGAGAACTATTCGCGTTATCTCACT
GGCCGCAATCCCGGCGAGCCGCCGCCGACGCTGTTCGAATATATCCCTGATAACGCACTGCTGTTCATCGACGAAAGCCA
CGTCTCCGTCAGCCAGATCGGCGGCATGTATCGCGGCGACTTCCGGCGCAAGGCGACGCTGGCCGAATACGGCTTCCGCC
TGCCCTCCTGCATGGATAACCGCCCGCTGCGCTTCGAGGAATGGGATGCGATGCGCCCGCTGACGGTGGCGGTTTCGGCC
ACCCCCGGCTCGTGGGAGATGGAACAGGCCGGCGGCGTCTTCGCCGAACAGGTCATCCGCCCGACGGGCCTCATCGATCC
GCCGGTGGAAGTGCGCGCCGCCCGCAGTCAGGTGGACGATGTTCTCGGCGAAATCCGCGAGACTGCCGCCAAGGGTTACC
GCACGCTCTGTACCGTGCTGACAAAACGCATGGCCGAGGACCTGACCGAATATCTGCATGAACAGGGCGTTCGCGTACGC
TACATGCACTCGGATATCGACACGCTGGAGCGCATCGAGATCATCCGCGATCTGCGCCTCGGCGCTTTCGACGTGCTTGT
TGGTATCAACCTGTTGCGCGAAGGTCTCGATATTCCCGAATGCGGTTTCGTGGCGATCCTCGATGCCGACAAGGAAGGCT
TCCTGCGCTCCGAAACCTCGCTGATCCAGACTATCGGCCGCGCCGCCCGTAACGTCGATGGCAAGGTCATCCTTTATGCC
GACAACATCACCGGCTCGATGAAGCGGGCGATGGAGGAAACCTCCCGCCGTCGCGAAAAGCAGGTGGCATATAACGCCGA
ACACGGCATCACGCCGGAATCGGTCAAGGCGAAGATCTCCGATATTCTTGATTCAGTTTATGAGCGCGATCACGTAAGGG
CAGATATATCAGGCGCTTCCGGCAAGGGCTTCGCCGATGGCGGCCATCTCGTCGGCAATAATCTGCAGTCCCATCTCAAC
GCGCTGGAAAAATCCATGCGCGATGCCGCCGCCGATCTCGACTTCGAAAAGGCCGCCCGCCTGCGCGACGAAATCAAACG
TCTCAAGGCCGCCGAACTCGCCACCATGGACGACCCCATGGCGAAGGAAGAGGCCCGCGCCATCGAAGGCGGCGGAAAAA
ACAACAGACGCAGCCACTTGTCGATCTCCCCGCCTGAGGGGGAGACATCCGGCAGGACGGAGGCGGGCGCCGCGCCGAAC
GAAAGCGGCAAATCCCTTTTCACCAAACCCTCACTGGATGAAATGGGCCCCGGCTCAGATGCGGGAAAACCGCTGTTCCG
CAGGAACACGCTGGACGAGATGACCGTGGGCAGAACCGAAAAGCCCGTGCGCAGCGCAGTACCAGACAAGCCCGAGACCG
AATCCGGCAAACGCTTCTCACCGCTCATGGAAGGCCAGCCGGAGCGTGCTACCGATGATCCGCGACCACTGGTGCGTGGC
AAGATCGGCGCGGGGTCCTATGAAGACGCCGGCGAGCAGAAGCGCAAAAGCCGGACGAAGAACAAGACGGGCCGACCGGG
GCGCTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(718-759)

Type III restriction enzyme, res subunit (ResIII)

(181-305)

UvrB/uvrC motif (UVR)

(799-830)

UvrB interaction domain (UvrB_inter)

(326-415)

Helicase conserved C-terminal domain (Helicase_C)

(607-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.489

67.308

0.373
  uvrB Streptococcus pneumoniae R6

55.489

67.308

0.373
  uvrB Streptococcus pneumoniae D39

55.489

67.308

0.373