Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   U0027_RS07380 Genome accession   NZ_CP139997
Coordinates   1463768..1465873 (+) Length   701 a.a.
NCBI ID   WP_031233642.1    Uniprot ID   A0ABD5LHH8
Organism   Agrobacterium tumefaciens strain HAMBI 105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1458768..1470873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0027_RS07365 (U0027_07360) - 1459277..1459618 (-) 342 WP_020809531.1 hypothetical protein -
  U0027_RS07370 (U0027_07365) mfd 1459767..1463264 (-) 3498 WP_020809532.1 transcription-repair coupling factor -
  U0027_RS07375 (U0027_07370) - 1463268..1463579 (-) 312 WP_003508031.1 succinate dehydrogenase assembly factor 2 -
  U0027_RS07380 (U0027_07375) recG 1463768..1465873 (+) 2106 WP_031233642.1 ATP-dependent DNA helicase RecG Machinery gene
  U0027_RS07385 (U0027_07380) - 1465886..1466158 (+) 273 WP_003508029.1 hypothetical protein -
  U0027_RS07390 (U0027_07385) - 1466213..1466470 (+) 258 WP_114835687.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  U0027_RS07395 (U0027_07390) - 1466467..1466850 (+) 384 WP_003508024.1 type II toxin-antitoxin system VapC family toxin -
  U0027_RS07400 (U0027_07395) - 1466854..1467522 (-) 669 WP_003508022.1 DUF502 domain-containing protein -
  U0027_RS07405 (U0027_07400) - 1467536..1468039 (-) 504 WP_060726324.1 GNAT family N-acetyltransferase -
  U0027_RS07410 (U0027_07405) glmS 1468036..1469862 (-) 1827 WP_020809235.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76446.10 Da        Isoelectric Point: 7.2726

>NTDB_id=832927 U0027_RS07380 WP_031233642.1 1463768..1465873(+) (recG) [Agrobacterium tumefaciens strain HAMBI 105]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PPPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDVAAKILSQLPFSLTPSQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHYATISKLAQAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRSAL
KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGNALRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=832927 U0027_RS07380 WP_031233642.1 1463768..1465873(+) (recG) [Agrobacterium tumefaciens strain HAMBI 105]
ATGCGCCCGGCCATTCTCGATCCGCTGTTTGCTTCCGTCTCCACCCTTGCAGGTGTGGGGCCGAAGCTTGCCGATCTTCT
GGCCAAGCTCTTGAGCCGGGAAAACGCCGATGACACCCGCGTGATCGATCTCCTGTTCCACGCGCCGTCCAACGTCATCG
ACCGCCGCAACCGCCCCGGCATTGCGCTTGCCGCACCCGGCGCCATTGTCACCATTCAGGGACGAGTGGACCGCCACCAG
CCGCCACCGCCGGGAAACCGCTCCGCGCCCTATCGCGTCTTCCTGCATGACGAGACCGGCGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGCGACTGGCTGTCCAAGGCGCTGCCGGTCGATGAGGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ATGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAACTTTCCGAGGCCGAAAACCTGCCACTTGTGGAAGCCGTT
TATCCCATGACCGCCGGACTGTCCCCCAAGGTGCTGCGGCGGGCGATCGAAGGCGGGCTGTCGAAGCTGCCGGTCTTTCC
GGAGTGGATCGATGAAACGCTGAAGACCAGGCAAGGCTTCGGCGATGTCGCTTCGAGCTTCCGTGAGTTGCACGACCCGC
GTGACAGCGCCGATATCGAGCCGCAGGCTCCAGCGCGCAGGCGGCTTGCCTATGACGAATTCCTCGCCGGGCAGCTGTCA
CTCGCATTGGTGCGCCAGCGGCTGCGCAAAGTGGCGGGCCAGCCGATCCGCGCCAAGGGTGATGTCGCCGCAAAAATCCT
GTCGCAACTGCCCTTCTCGCTGACACCGAGCCAGAGCGCTGCGGTGAAGGATATTCTGACTGACATGGCCGGCGAAGACC
GCATGTTGCGGCTGCTGCAGGGCGATGTCGGCGCAGGCAAGACGCTGGTGGCGCTGATGGCGATGGCAACGGCCGTGGAG
GCAGGCGGACAGGCGGTGCTGATGGCCCCGACCGAAATCCTCGCCCGGCAGCACTACGCCACCATTTCCAAGCTCGCTCA
GGCCGCGGGCATTACCGTCGAAGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGGCGCGAGATCGAGGAGCGCGTCGCAT
CAGGTGAAGCGCAGATCGTCATCGGCACCCATGCGTTGTTTCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGACGAACAGCACCGTTTCGGCGTTCATCAACGCCTGCGCCTCACCGCCAAGGGCATCACCCCGCATATGCTGGTCAT
GACTGCCACGCCCATTCCGCGCACGCTGGTTCTGGCCGCCTTCGGCGACATGGATGTCTCCAAGCTCACCGAAAAGCCGG
CCGGCCGCAAGCCTATCCAGACGGTAACGATCCCCACCGAACGGATCGGCGACATTGTCGAGCGGCTGCGTTCCGCGCTG
AAGGATGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAAGAAACGGAAGAATCCGACCTTATGTCGGCGGAGGAGCG
GCACGCAGTTCTCTCGCAGATGCTGGGCGCCAATATCGGCCTCATCCATGGCCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTCGCCTTCAAGAGCGGCGAAACCCGGCTTCTGGTAGCGACGACCGTGGTGGAAGTTGGCGTCGACGTGCCTGAC
GCGACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTTGCCCAGCTTCACCAGCTGCGCGGACGCGTGGGGCGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAAGGCCCGCTCAGCGAAAACGGCCGCGCCCGGCTTTCCATCCTGCGTG
ACAGCGAGGATGGCTTCCTGATCGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAGTTGCTCGGCACCCGCCAGTCC
GGCACGCCGGGATTCCGCATCGCCAGCCTGGAAGCCCACGCCGACCTTCTGGAAATCGCCCGCAAGGACGCGGCCTACGT
CATCGAGCGCGACCCCGAACTGACGGGCCCGCGCGGCAATGCGCTGCGCACCCTGCTCTACCTGCACCGCCGCGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-682)

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(476-587)

RecG wedge domain (RecG_wedge)

(18-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5LHH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.018

94.722

0.398
  recG/mmsA Streptococcus pneumoniae R6

39.528

96.719

0.382
  recG/mmsA Streptococcus pneumoniae R36A

39.528

96.719

0.382
  recG Bacillus subtilis subsp. subtilis str. 168

38.856

97.29

0.378