Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QMY17_RS03260 Genome accession   NZ_CP125812
Coordinates   630111..630800 (+) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 625111..635800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS03235 - 625443..625898 (-) 456 WP_014481057.1 hypothetical protein -
  QMY17_RS03240 - 625947..626402 (-) 456 WP_041516563.1 hypothetical protein -
  QMY17_RS03245 - 627009..628001 (-) 993 WP_014481056.1 LCP family protein -
  QMY17_RS03250 - 628001..628654 (-) 654 WP_014481055.1 YigZ family protein -
  QMY17_RS03255 degS 628871..630028 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QMY17_RS03260 degU 630111..630800 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  QMY17_RS03265 fakBA 630898..631743 (+) 846 WP_014481053.1 DegV family protein -
  QMY17_RS03270 comFA 631850..633241 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  QMY17_RS03275 comFB 633301..633597 (+) 297 WP_003227989.1 late competence protein ComFB -
  QMY17_RS03280 comFC 633561..634283 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QMY17_RS03285 yvyF 634356..634775 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  QMY17_RS03290 flgM 634856..635122 (+) 267 WP_318245634.1 flagellar biosynthesis anti-sigma factor FlgM -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=832915 QMY17_RS03260 WP_014481054.1 630111..630800(+) (degU) [Bacillus subtilis strain N3378-3At]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=832915 QMY17_RS03260 WP_014481054.1 630111..630800(+) (degU) [Bacillus subtilis strain N3378-3At]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996