Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QMY17_RS03280 Genome accession   NZ_CP125812
Coordinates   633561..634283 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 635252..636376 633561..634283 flank 969


Gene organization within MGE regions


Location: 633561..636376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS03280 comFC 633561..634283 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QMY17_RS03285 yvyF 634356..634775 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  QMY17_RS03290 flgM 634856..635122 (+) 267 WP_318245634.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMY17_RS03295 - 635252..636376 (-) 1125 WP_014478926.1 IS4-like element IS4Bsu1 family transposase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=832917 QMY17_RS03280 WP_014481051.1 633561..634283(+) (comFC) [Bacillus subtilis strain N3378-3At]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=832917 QMY17_RS03280 WP_014481051.1 633561..634283(+) (comFC) [Bacillus subtilis strain N3378-3At]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992