Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   QMZ12_RS06620 Genome accession   NZ_CP125738
Coordinates   1223400..1224581 (+) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain MS2217     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1218400..1229581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ12_RS06595 (QMZ12_06580) ctsR 1218961..1219272 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  QMZ12_RS06600 (QMZ12_06585) ctsD 1219250..1220662 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMZ12_RS06605 (QMZ12_06590) ctsP 1220655..1221263 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMZ12_RS06610 (QMZ12_06595) ctsX 1221267..1221854 (+) 588 WP_002851370.1 membrane protein Machinery gene
  QMZ12_RS06615 (QMZ12_06600) ctsE 1221844..1223403 (+) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  QMZ12_RS06620 (QMZ12_06605) ctsF 1223400..1224581 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  QMZ12_RS06625 (QMZ12_06610) - 1224574..1225338 (-) 765 WP_002855821.1 TSUP family transporter -
  QMZ12_RS06630 (QMZ12_06615) - 1225342..1226106 (-) 765 WP_002851318.1 TIGR02757 family protein -
  QMZ12_RS06635 (QMZ12_06620) flgK 1226123..1227949 (-) 1827 WP_002876047.1 flagellar hook-associated protein FlgK -
  QMZ12_RS06640 (QMZ12_06625) - 1227959..1228393 (-) 435 WP_002876049.1 flagellar protein FlgN -
  QMZ12_RS06645 (QMZ12_06630) flgM 1228436..1228633 (-) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMZ12_RS06650 (QMZ12_06635) - 1228696..1229037 (-) 342 WP_002869194.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=832605 QMZ12_RS06620 WP_002868229.1 1223400..1224581(+) (ctsF) [Campylobacter jejuni strain MS2217]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=832605 QMZ12_RS06620 WP_002868229.1 1223400..1224581(+) (ctsF) [Campylobacter jejuni strain MS2217]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987