Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   QMZ12_RS06610 Genome accession   NZ_CP125738
Coordinates   1221267..1221854 (+) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain MS2217     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216267..1226854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ12_RS06595 (QMZ12_06580) ctsR 1218961..1219272 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  QMZ12_RS06600 (QMZ12_06585) ctsD 1219250..1220662 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMZ12_RS06605 (QMZ12_06590) ctsP 1220655..1221263 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMZ12_RS06610 (QMZ12_06595) ctsX 1221267..1221854 (+) 588 WP_002851370.1 membrane protein Machinery gene
  QMZ12_RS06615 (QMZ12_06600) ctsE 1221844..1223403 (+) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  QMZ12_RS06620 (QMZ12_06605) ctsF 1223400..1224581 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  QMZ12_RS06625 (QMZ12_06610) - 1224574..1225338 (-) 765 WP_002855821.1 TSUP family transporter -
  QMZ12_RS06630 (QMZ12_06615) - 1225342..1226106 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=832603 QMZ12_RS06610 WP_002851370.1 1221267..1221854(+) (ctsX) [Campylobacter jejuni strain MS2217]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=832603 QMZ12_RS06610 WP_002851370.1 1221267..1221854(+) (ctsX) [Campylobacter jejuni strain MS2217]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1