Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   QMZ12_RS06595 Genome accession   NZ_CP125738
Coordinates   1218961..1219272 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain MS2217     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213961..1224272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ12_RS06585 (QMZ12_06570) - 1214644..1215285 (+) 642 WP_002858866.1 HAD family hydrolase -
  QMZ12_RS06590 (QMZ12_06575) nifJ 1215377..1218937 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  QMZ12_RS06595 (QMZ12_06580) ctsR 1218961..1219272 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  QMZ12_RS06600 (QMZ12_06585) ctsD 1219250..1220662 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMZ12_RS06605 (QMZ12_06590) ctsP 1220655..1221263 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMZ12_RS06610 (QMZ12_06595) ctsX 1221267..1221854 (+) 588 WP_002851370.1 membrane protein Machinery gene
  QMZ12_RS06615 (QMZ12_06600) ctsE 1221844..1223403 (+) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=832600 QMZ12_RS06595 WP_002855438.1 1218961..1219272(+) (ctsR) [Campylobacter jejuni strain MS2217]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=832600 QMZ12_RS06595 WP_002855438.1 1218961..1219272(+) (ctsR) [Campylobacter jejuni strain MS2217]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1