Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   QMZ11_RS01225 Genome accession   NZ_CP125737
Coordinates   215172..215759 (+) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain MS2191     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 210172..220759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ11_RS01210 (QMZ11_01205) ctsR 212866..213177 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  QMZ11_RS01215 (QMZ11_01210) ctsD 213155..214567 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMZ11_RS01220 (QMZ11_01215) ctsP 214560..215168 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMZ11_RS01225 (QMZ11_01220) ctsX 215172..215759 (+) 588 WP_002851370.1 membrane protein Machinery gene
  QMZ11_RS01230 (QMZ11_01225) ctsE 215749..217308 (+) 1560 WP_020247122.1 GspE/PulE family protein Machinery gene
  QMZ11_RS01235 (QMZ11_01230) ctsF 217305..218486 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  QMZ11_RS01240 (QMZ11_01235) - 218479..219243 (-) 765 WP_002855821.1 TSUP family transporter -
  QMZ11_RS01245 (QMZ11_01240) - 219247..220011 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=832568 QMZ11_RS01225 WP_002851370.1 215172..215759(+) (ctsX) [Campylobacter jejuni strain MS2191]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=832568 QMZ11_RS01225 WP_002851370.1 215172..215759(+) (ctsX) [Campylobacter jejuni strain MS2191]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1