Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   QMZ11_RS01220 Genome accession   NZ_CP125737
Coordinates   214560..215168 (+) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain MS2191     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 209560..220168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ11_RS01210 (QMZ11_01205) ctsR 212866..213177 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  QMZ11_RS01215 (QMZ11_01210) ctsD 213155..214567 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMZ11_RS01220 (QMZ11_01215) ctsP 214560..215168 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMZ11_RS01225 (QMZ11_01220) ctsX 215172..215759 (+) 588 WP_002851370.1 membrane protein Machinery gene
  QMZ11_RS01230 (QMZ11_01225) ctsE 215749..217308 (+) 1560 WP_020247122.1 GspE/PulE family protein Machinery gene
  QMZ11_RS01235 (QMZ11_01230) ctsF 217305..218486 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  QMZ11_RS01240 (QMZ11_01235) - 218479..219243 (-) 765 WP_002855821.1 TSUP family transporter -
  QMZ11_RS01245 (QMZ11_01240) - 219247..220011 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=832567 QMZ11_RS01220 WP_002851464.1 214560..215168(+) (ctsP) [Campylobacter jejuni strain MS2191]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=832567 QMZ11_RS01220 WP_002851464.1 214560..215168(+) (ctsP) [Campylobacter jejuni strain MS2191]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995