Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   QMZ11_RS01210 Genome accession   NZ_CP125737
Coordinates   212866..213177 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain MS2191     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 207866..218177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ11_RS01200 (QMZ11_01195) - 208548..209189 (+) 642 WP_002887739.1 HAD family hydrolase -
  QMZ11_RS01205 (QMZ11_01200) nifJ 209282..212842 (+) 3561 WP_002887741.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  QMZ11_RS01210 (QMZ11_01205) ctsR 212866..213177 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  QMZ11_RS01215 (QMZ11_01210) ctsD 213155..214567 (+) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMZ11_RS01220 (QMZ11_01215) ctsP 214560..215168 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMZ11_RS01225 (QMZ11_01220) ctsX 215172..215759 (+) 588 WP_002851370.1 membrane protein Machinery gene
  QMZ11_RS01230 (QMZ11_01225) ctsE 215749..217308 (+) 1560 WP_020247122.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=832565 QMZ11_RS01210 WP_002855438.1 212866..213177(+) (ctsR) [Campylobacter jejuni strain MS2191]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=832565 QMZ11_RS01210 WP_002855438.1 212866..213177(+) (ctsR) [Campylobacter jejuni strain MS2191]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1