Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R8624_RS00920 Genome accession   NZ_AP026930
Coordinates   172522..173115 (+) Length   197 a.a.
NCBI ID   WP_050246535.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 167522..178115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8624_RS00895 (PC1195_01620) ribE 167831..168298 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  R8624_RS00900 (PC1195_01630) - 168299..169504 (-) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R8624_RS00905 (PC1195_01640) ribE 169524..170159 (-) 636 WP_000493842.1 riboflavin synthase -
  R8624_RS00910 (PC1195_01650) ribD 170144..171244 (-) 1101 WP_001284088.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R8624_RS00915 - 171634..172448 (-) 815 Protein_177 IS5-like element IS1515 family transposase -
  R8624_RS00920 (PC1195_01680) ruvA 172522..173115 (+) 594 WP_050246535.1 Holliday junction branch migration protein RuvA Machinery gene
  R8624_RS00925 (PC1195_01690) - 173125..173688 (+) 564 WP_000166586.1 DNA-3-methyladenine glycosylase I -
  R8624_RS00930 (PC1195_01700) - 173685..174362 (+) 678 WP_050147877.1 CPBP family intramembrane glutamic endopeptidase -
  R8624_RS00935 (PC1195_01710) - 174503..175534 (-) 1032 WP_000255119.1 S66 peptidase family protein -
  R8624_RS00940 (PC1195_01720) - 175789..176472 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  R8624_RS00945 (PC1195_01730) - 176484..177428 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21578.04 Da        Isoelectric Point: 6.7338

>NTDB_id=83246 R8624_RS00920 WP_050246535.1 172522..173115(+) (ruvA) [Streptococcus pneumoniae strain PZ900701208]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQAVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=83246 R8624_RS00920 WP_050246535.1 172522..173115(+) (ruvA) [Streptococcus pneumoniae strain PZ900701208]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGCTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Streptococcus pneumoniae R6

98.985

100

0.99
  ruvA Streptococcus pneumoniae D39

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416

Multiple sequence alignment