Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QLH32_RS14135 Genome accession   NZ_CP125669
Coordinates   2974605..2975033 (+) Length   142 a.a.
NCBI ID   WP_283266708.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2969605..2980033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS14110 (QLH32_14110) lpoB 2970322..2970924 (-) 603 WP_267981731.1 penicillin-binding protein activator LpoB -
  QLH32_RS14115 (QLH32_14115) - 2970953..2971360 (-) 408 WP_283266703.1 DUF1425 domain-containing protein -
  QLH32_RS14120 (QLH32_14120) - 2971379..2972749 (-) 1371 WP_283266704.1 hypothetical protein -
  QLH32_RS14125 (QLH32_14125) - 2972954..2973727 (-) 774 WP_283266705.1 SDR family oxidoreductase -
  QLH32_RS14130 (QLH32_14130) mazG 2973830..2974636 (+) 807 WP_283266706.1 nucleoside triphosphate pyrophosphohydrolase -
  QLH32_RS14135 (QLH32_14135) comEA 2974605..2975033 (+) 429 WP_283266708.1 ComEA family DNA-binding protein Machinery gene
  QLH32_RS14140 (QLH32_14140) pcnB 2975173..2976630 (+) 1458 WP_283266709.1 polynucleotide adenylyltransferase PcnB -
  QLH32_RS14145 (QLH32_14145) folK 2976627..2977115 (+) 489 WP_283266710.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QLH32_RS14150 (QLH32_14150) panB 2977155..2977964 (+) 810 WP_283266711.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QLH32_RS14155 (QLH32_14155) panC 2977968..2978813 (+) 846 WP_283266713.1 pantoate--beta-alanine ligase -
  QLH32_RS14160 (QLH32_14160) rapZ 2978841..2979692 (+) 852 WP_283266715.1 RNase adapter RapZ -
  QLH32_RS14165 (QLH32_14165) - 2979689..2979958 (+) 270 WP_004678316.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15996.17 Da        Isoelectric Point: 10.3232

>NTDB_id=832361 QLH32_RS14135 WP_283266708.1 2974605..2975033(+) (comEA) [Acinetobacter sp. KCTC 92772]
MTLPHPHSKHKAVLFILLCLGCFSHLHAQQFDQSYDQWKAQQQARDQQLAKQSNNNYYLSRPTQQSSSKSVSSSVNHQGD
KISLNQANLQQLQTLNGVGEKKAQAIVEYRQKNGGFKTVDELVNVKGIGPKLLEKNKARLIL

Nucleotide


Download         Length: 429 bp        

>NTDB_id=832361 QLH32_RS14135 WP_283266708.1 2974605..2975033(+) (comEA) [Acinetobacter sp. KCTC 92772]
ATGACCTTGCCACATCCGCACAGCAAACATAAGGCTGTTTTATTTATTCTTTTATGTCTGGGATGCTTTTCCCATCTGCA
TGCACAGCAGTTTGACCAGTCTTATGACCAGTGGAAAGCCCAGCAGCAGGCACGTGATCAGCAATTGGCGAAGCAGTCCA
ACAACAATTATTATTTATCACGCCCAACACAGCAGTCCAGTTCAAAGTCAGTTTCATCTTCTGTAAATCATCAGGGCGAT
AAAATTAGCTTAAATCAGGCGAATCTACAGCAGTTACAGACCCTGAATGGTGTAGGCGAGAAAAAGGCTCAGGCCATTGT
GGAATATCGCCAAAAGAATGGCGGATTTAAAACAGTTGATGAACTGGTGAATGTGAAAGGGATTGGGCCAAAGTTGCTGG
AAAAAAACAAGGCACGGCTGATACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

51.471

95.775

0.493
  comEA Acinetobacter baumannii D1279779

48.889

95.07

0.465
  comEA Acinetobacter baylyi ADP1

45.775

100

0.458