Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QLH32_RS12400 Genome accession   NZ_CP125669
Coordinates   2603745..2604272 (+) Length   175 a.a.
NCBI ID   WP_283266467.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2598745..2609272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS12385 (QLH32_12385) pilM 2601315..2602373 (+) 1059 WP_283266464.1 pilus assembly protein PilM Machinery gene
  QLH32_RS12390 (QLH32_12390) pilN 2602373..2603005 (+) 633 WP_283266465.1 PilN domain-containing protein Machinery gene
  QLH32_RS12395 (QLH32_12395) pilO 2603002..2603745 (+) 744 WP_283266466.1 type 4a pilus biogenesis protein PilO Machinery gene
  QLH32_RS12400 (QLH32_12400) pilP 2603745..2604272 (+) 528 WP_283266467.1 pilus assembly protein PilP Machinery gene
  QLH32_RS12405 (QLH32_12405) pilQ 2604334..2606472 (+) 2139 WP_283269333.1 type IV pilus secretin PilQ Machinery gene
  QLH32_RS12410 (QLH32_12410) aroK 2606492..2607052 (+) 561 WP_283266468.1 shikimate kinase AroK -
  QLH32_RS12415 (QLH32_12415) aroB 2607074..2608156 (+) 1083 WP_283266469.1 3-dehydroquinate synthase -
  QLH32_RS12420 (QLH32_12420) - 2608176..2609054 (+) 879 WP_283266470.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19292.45 Da        Isoelectric Point: 8.8236

>NTDB_id=832353 QLH32_RS12400 WP_283266467.1 2603745..2604272(+) (pilP) [Acinetobacter sp. KCTC 92772]
MNHYKILFALILIGGLGGCDSRIDAVNQQMSEIRNQPPLPIEPAPIFTPVPLFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKANDTIALIQTPDGQIERVQVGSYLGMNQGRIIKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=832353 QLH32_RS12400 WP_283266467.1 2603745..2604272(+) (pilP) [Acinetobacter sp. KCTC 92772]
ATGAATCATTATAAGATTTTATTTGCTTTAATACTTATTGGTGGATTGGGTGGGTGTGATTCACGAATTGATGCGGTAAA
TCAGCAAATGTCGGAAATTCGTAATCAGCCTCCTTTGCCAATTGAACCTGCACCTATATTTACACCTGTACCTCTGTTTA
ATTATGCAGCGCATCAGTTAAAAAGCCCATTTATGCCGAGTTCTTTGGCTGCTGAGCTTAAGATTATGGCAGGTAAACGA
GTTTATCCAAACTTCAATCGCCAGCCGCAACCATTGGAAAGTTATGCTTTAGAATCTCTTAATATGAAAGGTAGTATGCG
TGGCAAAGCCAATGATACAATTGCCTTAATTCAAACCCCTGATGGACAAATTGAGCGTGTTCAAGTGGGTAGTTATTTGG
GTATGAATCAAGGGCGCATTATTAAAATTAGCCCAACTCAGATCGATTTAGTGGAAATTGTGCCAGATGGACGAGAGGGT
TATGTGGAAAGACCTCGAACACTCGTTTTAATTGGACCAGCACCGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

81.143

100

0.811
  comL Acinetobacter baylyi ADP1

71.429

100

0.714