Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QLH32_RS12390 Genome accession   NZ_CP125669
Coordinates   2602373..2603005 (+) Length   210 a.a.
NCBI ID   WP_283266465.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2597373..2608005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS12375 (QLH32_12375) - 2597729..2598547 (+) 819 WP_283266462.1 putative RNA methyltransferase -
  QLH32_RS12380 (QLH32_12380) ponA 2598561..2601152 (-) 2592 WP_283266463.1 penicillin-binding protein PBP1a -
  QLH32_RS12385 (QLH32_12385) pilM 2601315..2602373 (+) 1059 WP_283266464.1 pilus assembly protein PilM Machinery gene
  QLH32_RS12390 (QLH32_12390) pilN 2602373..2603005 (+) 633 WP_283266465.1 PilN domain-containing protein Machinery gene
  QLH32_RS12395 (QLH32_12395) pilO 2603002..2603745 (+) 744 WP_283266466.1 type 4a pilus biogenesis protein PilO Machinery gene
  QLH32_RS12400 (QLH32_12400) pilP 2603745..2604272 (+) 528 WP_283266467.1 pilus assembly protein PilP Machinery gene
  QLH32_RS12405 (QLH32_12405) pilQ 2604334..2606472 (+) 2139 WP_283269333.1 type IV pilus secretin PilQ Machinery gene
  QLH32_RS12410 (QLH32_12410) aroK 2606492..2607052 (+) 561 WP_283266468.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23276.58 Da        Isoelectric Point: 7.9495

>NTDB_id=832351 QLH32_RS12390 WP_283266465.1 2602373..2603005(+) (pilN) [Acinetobacter sp. KCTC 92772]
MAKINLLPWRDELREQRKKKFVAFCVGVAALGVASVFSGWVYFDQKLGDQEQANQLIVSTNQNLDTQLKSLDGLQERRNA
IIERMKLIQGLQGQRPITVRLVDELVRVTPPTMYLTKFTRLGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
ADENKNKTATSLVPRVEENYGSFVVTVDLGEIGTTAEAGPTAAPATGAAQ

Nucleotide


Download         Length: 633 bp        

>NTDB_id=832351 QLH32_RS12390 WP_283266465.1 2602373..2603005(+) (pilN) [Acinetobacter sp. KCTC 92772]
ATGGCAAAGATTAACCTACTCCCTTGGCGTGATGAGCTAAGAGAACAGCGAAAGAAAAAGTTTGTTGCATTTTGTGTTGG
GGTTGCTGCATTAGGTGTTGCATCAGTCTTTTCTGGTTGGGTGTATTTTGATCAGAAACTGGGTGATCAGGAACAGGCCA
ATCAATTGATTGTGAGTACCAACCAAAATTTGGATACGCAACTAAAATCGTTGGATGGCTTGCAAGAGCGCCGCAATGCG
ATTATCGAGCGTATGAAGTTGATTCAGGGGTTGCAAGGACAACGGCCAATTACAGTGCGATTAGTTGATGAGTTGGTACG
TGTCACACCTCCAACCATGTATCTGACCAAATTCACGCGTTTGGGCGATAAGTTTACCATTGAGGGTAAAGCGGAAAGTC
CAAATACAGTAGCTGAACTATTGCGTAATCTCGAAGCATCACCTTGGTATCGTAATGCCTTTATGAATTCTTTTTTGGCG
GCAGATGAAAATAAAAATAAAACAGCAACTTCCCTTGTTCCCCGCGTTGAGGAAAACTATGGAAGCTTTGTGGTCACCGT
GGATTTGGGTGAAATAGGTACAACTGCGGAAGCTGGTCCAACGGCAGCACCAGCAACGGGAGCGGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

75.117

100

0.762
  comN Acinetobacter baylyi ADP1

73.206

99.524

0.729