Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QLH32_RS09655 Genome accession   NZ_CP125669
Coordinates   2037659..2039092 (+) Length   477 a.a.
NCBI ID   WP_283266065.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2032659..2044092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS09635 (QLH32_09635) - 2033013..2033915 (-) 903 WP_283266062.1 hypothetical protein -
  QLH32_RS09640 (QLH32_09640) pbpG 2034131..2035207 (-) 1077 WP_283266063.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  QLH32_RS09645 (QLH32_09645) - 2035419..2036054 (+) 636 WP_267981582.1 response regulator -
  QLH32_RS09650 (QLH32_09650) pilS 2036071..2037636 (+) 1566 WP_283266064.1 ATP-binding protein Regulator
  QLH32_RS09655 (QLH32_09655) pilR 2037659..2039092 (+) 1434 WP_283266065.1 sigma-54 dependent transcriptional regulator Regulator
  QLH32_RS09660 (QLH32_09660) - 2039139..2040317 (-) 1179 WP_283266066.1 S41 family peptidase -
  QLH32_RS09665 (QLH32_09665) gpmI 2040389..2041933 (-) 1545 WP_283266067.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  QLH32_RS09670 (QLH32_09670) lptG 2042054..2043124 (-) 1071 WP_267981590.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53529.53 Da        Isoelectric Point: 6.3270

>NTDB_id=832342 QLH32_RS09655 WP_283266065.1 2037659..2039092(+) (pilR) [Acinetobacter sp. KCTC 92772]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWELPAKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDENIDLAHLQTAPLRGSIATPVTMPFAT
QEEHEQTHQSASPAISSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=832342 QLH32_RS09655 WP_283266065.1 2037659..2039092(+) (pilR) [Acinetobacter sp. KCTC 92772]
ATGGCAACTAAACAACCACTCGTCTTGCTGGTAGACGATGAAGAAGACTTATGTCTCCTCATGCAAATGACGCTTGCACG
AATGGGGATTAAAACCCATCTTGCCTATCGCGTAGAGCAAGCAAAAAAGTTCTTTACTGAATTTCAGTATGATGCCTGTT
TAACAGACCTAAACCTTCCAGATGGCAATGGTCTCGATTTAGTCAAACACGTAACGCAGAACTATCCCAATACACCGATT
GCGGTACTAACCGCCTATGGCAATATGGATATTGCCATTGCGGCATTGAAAGCGGGTGCATTTGATTTTGTCAGTAAGCC
TGTCAATCAAACACATTTAGACCAGTTGATTCAAAAGGCGTTAAATCGCCCGCAACCTGAACAGGAAGCGGCTGAAACAG
CTTTAGAAAATAAATTACTGATTGGCCGTTCGGCACCGATTCAACAATTACGGATCGCACTCAAGAAAATTGCCCGTTCT
CAGGCACCTGTATTTATCACGGGCGAGTCTGGAACAGGTAAGGAAGTCGTTGCCAATCTGGTTCATCGTCTAAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGCGGTGCCATTCCAACTGAATTGATGGAAAGTGAACTGTTCGGACATAAGA
AAGGCAGTTTTACAGGTGCGGCACAGGACAAACAGGGCTTAATTCTGTCAGCACACGGTGGCAGCCTGTTTCTGGACGAG
ATCGCAGAACTACCACTCAATATGCAGGTCAAATTATTGCGTGCCGTACAGGAGAAGAAAATCCGTCCTGTCGGCTCAGA
TCAGGAAATTGATGTTGATTTCCGTGTGATCAGTGCCAGCCATCAGGACCTTGAACTTCTGGTTCAGCAGGGCCGTTTCC
GTCAGGACTTATTTTTCCGTATTCACGTCATGGATATCGTGCTGCCACCTTTGCGTGAGCGTGGCCAGGACATTCTTTTG
TTGGCCAATCACTTTATCCAGAAAATTAGCCAGGAATGGGAACTTCCTGCAAAAACCCTGTCTTCCCGTGCAGAACAGTT
CCTGTTACAGCAATATTTCCCAGGCAATGTGCGTGAGTTACGCAACATCATTGAACGCGCCATCACCCTCAGTGATGATG
AAAACATCGATCTTGCACATTTGCAAACAGCCCCATTACGCGGCTCAATTGCGACTCCTGTCACCATGCCATTCGCAACA
CAGGAAGAGCATGAACAGACTCATCAAAGTGCCAGCCCTGCAATAAGTTCTAAAAAGCTTCCACCTGAGGGGCTGGAACG
TTATCTAGAGAATATTGAGAAAGAAATCCTGCTCAATGCACTCAATCTCACCCACTGGAACCGTACCTTGGCCGCCAAGA
AACTGGGCATGACGTTCCGCTCTTTACGCTATCGTTTGAAAAAATTTGGACTCGATACTGAAGATGATGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.857

100

0.839
  pilR Pseudomonas aeruginosa PAK

50.538

97.484

0.493