Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QLH32_RS04100 Genome accession   NZ_CP125669
Coordinates   830316..831023 (+) Length   235 a.a.
NCBI ID   WP_267979856.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 825316..836023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS04085 (QLH32_04085) - 828401..828646 (-) 246 WP_283268232.1 hypothetical protein -
  QLH32_RS04090 (QLH32_04090) - 828877..829677 (+) 801 WP_283268233.1 peptidoglycan DD-metalloendopeptidase family protein -
  QLH32_RS04095 (QLH32_04095) - 829746..830168 (-) 423 WP_283268235.1 OsmC family protein -
  QLH32_RS04100 (QLH32_04100) crp 830316..831023 (+) 708 WP_267979856.1 cAMP-activated global transcriptional regulator CRP Regulator
  QLH32_RS04105 (QLH32_04105) - 831238..832014 (+) 777 WP_283268242.1 M48 family metallopeptidase -
  QLH32_RS04110 (QLH32_04110) - 832258..833988 (-) 1731 WP_283268244.1 biotin carboxylase N-terminal domain-containing protein -
  QLH32_RS04115 (QLH32_04115) - 833972..835564 (-) 1593 WP_283268245.1 5-oxoprolinase/urea amidolyase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26583.21 Da        Isoelectric Point: 4.7478

>NTDB_id=832329 QLH32_RS04100 WP_267979856.1 830316..831023(+) (crp) [Acinetobacter sp. KCTC 92772]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIIDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFSEEEFDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=832329 QLH32_RS04100 WP_267979856.1 830316..831023(+) (crp) [Acinetobacter sp. KCTC 92772]
ATGACTTCAAATTTTTCACAACTTAGCACTGATGCTTTATCTCCAGGCCAACTGCCTGAGTCAGTAAAGGCTTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTATTGATGCTGGAACTGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATTATATTACGTGAAGATGATGAGCGTGAAATTGTTGTGGCCTACCTCAACCCAGGCGACTTC
TTTGGTGAAATGGGTCTTTTTGAAAAGAATCCTCAACGTACCGCAGAAGTACGTACCCGAGATGTATGTGAGATTGCTGA
AATTTCCTACGACAATTTCCATGAGTTAAGCAAGCAATACCCTGACCTAAGCTATGCGGTATTTGCCCAGTTGGTGCGTC
GTCTTAAGAACACCACCCGTAAAGTGACTGACCTTGCGTTTATTGATGTGTCTGGTCGTATTGCACGTTGTCTAATCGAC
TTATCTGCACAACCTGAGGCAATGATTTTACCGAATGGTCGTCAGATTCGTATTACCCGTCAGGAAATTGGCCGTATTGT
GGGCTGTTCCCGTGAAATGGTTGGCCGTGTGCTTAAAACACTTGAAGACCAGGGCATGATCCAGACTGATGGTAAGGCCA
TTTTAATTTTTGATACGTCTTTAGAAGAAAATGCTTTTTCTGAAGAGGAGTTTGACGACGAAGATTGA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.468

100

0.945
  crp Vibrio cholerae strain A1552

48.077

88.511

0.426
  crp Haemophilus influenzae Rd KW20

49.741

82.128

0.409