Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   U0449_RS04315 Genome accession   NZ_CP139862
Coordinates   852796..853389 (-) Length   197 a.a.
NCBI ID   WP_000271486.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 05H0020-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 847796..858389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0449_RS04290 - 848487..849431 (+) 945 WP_000815629.1 magnesium transporter CorA family protein -
  U0449_RS04295 - 849443..850126 (+) 684 WP_000078022.1 DUF1129 domain-containing protein -
  U0449_RS04300 - 850381..851412 (+) 1032 WP_000255096.1 S66 peptidase family protein -
  U0449_RS04305 - 851549..852226 (-) 678 WP_000987422.1 CPBP family intramembrane glutamic endopeptidase -
  U0449_RS04310 - 852223..852786 (-) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  U0449_RS04315 ruvA 852796..853389 (-) 594 WP_000271486.1 Holliday junction branch migration protein RuvA Machinery gene
  U0449_RS04320 ribD 853795..854895 (+) 1101 WP_001284096.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  U0449_RS04325 ribE 854880..855515 (+) 636 WP_000493839.1 riboflavin synthase -
  U0449_RS04330 - 855535..856740 (+) 1206 WP_001823435.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  U0449_RS04335 ribE 856741..857208 (+) 468 WP_001099505.1 6,7-dimethyl-8-ribityllumazine synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21620.12 Da        Isoelectric Point: 6.7338

>NTDB_id=832301 U0449_RS04315 WP_000271486.1 852796..853389(-) (ruvA) [Streptococcus pneumoniae strain 05H0020-2]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=832301 U0449_RS04315 WP_000271486.1 852796..853389(-) (ruvA) [Streptococcus pneumoniae strain 05H0020-2]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGATCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Streptococcus pneumoniae R6

98.985

100

0.99
  ruvA Streptococcus pneumoniae D39

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421