Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   U0447_RS06395 Genome accession   NZ_CP139861
Coordinates   1214768..1215361 (+) Length   197 a.a.
NCBI ID   WP_000271483.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1209768..1220361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS06375 ribE 1210950..1211417 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  U0447_RS06380 - 1211418..1212623 (-) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  U0447_RS06385 ribE 1212643..1213278 (-) 636 WP_000493846.1 riboflavin synthase -
  U0447_RS06390 ribD 1213263..1214363 (-) 1101 WP_001284105.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  U0447_RS06395 ruvA 1214768..1215361 (+) 594 WP_000271483.1 Holliday junction branch migration protein RuvA Machinery gene
  U0447_RS06400 - 1215371..1215934 (+) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  U0447_RS06405 - 1215931..1216608 (+) 678 WP_000987422.1 CPBP family intramembrane glutamic endopeptidase -
  U0447_RS06410 - 1216745..1217776 (-) 1032 WP_000255096.1 S66 peptidase family protein -
  U0447_RS06415 - 1218031..1218714 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  U0447_RS06420 - 1218726..1219670 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21620.12 Da        Isoelectric Point: 6.7338

>NTDB_id=832225 U0447_RS06395 WP_000271483.1 1214768..1215361(+) (ruvA) [Streptococcus pneumoniae strain 16H2017-2]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLIYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=832225 U0447_RS06395 WP_000271483.1 1214768..1215361(+) (ruvA) [Streptococcus pneumoniae strain 16H2017-2]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGATTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGATCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

98.985

100

0.99
  ruvA Streptococcus pneumoniae R6

98.477

100

0.985
  ruvA Streptococcus pneumoniae D39

98.477

100

0.985
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416