Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   U0447_RS01880 Genome accession   NZ_CP139861
Coordinates   366672..367394 (-) Length   240 a.a.
NCBI ID   WP_001820349.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 361672..372394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS01870 - 364246..365412 (-) 1167 WP_000521385.1 MalY/PatB family protein -
  U0447_RS01875 - 365420..366514 (-) 1095 WP_000031965.1 cystathionine gamma-synthase -
  U0447_RS01880 rcrP 366672..367394 (-) 723 WP_001820349.1 ABC transporter ATP-binding protein Regulator
  U0447_RS01885 - 367581..368102 (-) 522 Protein_370 ABC transporter transmembrane domain-containing protein -
  U0447_RS01890 - 368120..368353 (-) 234 WP_001820350.1 hypothetical protein -
  U0447_RS01895 amiA 368525..370483 (-) 1959 WP_000748881.1 peptide ABC transporter substrate-binding protein Regulator
  U0447_RS01900 - 370686..372308 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27150.04 Da        Isoelectric Point: 5.0452

>NTDB_id=832160 U0447_RS01880 WP_001820349.1 366672..367394(-) (rcrP) [Streptococcus pneumoniae strain 16H2017-2]
MNFNHVYFGYDENRPVLKDIICSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=832160 U0447_RS01880 WP_001820349.1 366672..367394(-) (rcrP) [Streptococcus pneumoniae strain 16H2017-2]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTATTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371
  rcrQ Streptococcus mutans UA159

36.667

100

0.367
  comA Streptococcus mitis SK321

37.607

97.5

0.367
  comA/nlmT Streptococcus mutans UA159

37.826

95.833

0.362
  comA Streptococcus mitis NCTC 12261

37.179

97.5

0.362