Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QFX16_RS21565 Genome accession   NZ_CP125619
Coordinates   4669760..4671982 (-) Length   740 a.a.
NCBI ID   WP_283181270.1    Uniprot ID   -
Organism   Pseudomonas svalbardensis strain PMCC 200367     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4664760..4676982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX16_RS21530 murB 4665137..4666156 (-) 1020 WP_283181265.1 UDP-N-acetylmuramate dehydrogenase -
  QFX16_RS21535 - 4666153..4666617 (-) 465 WP_283181266.1 low molecular weight protein-tyrosine-phosphatase -
  QFX16_RS21540 kdsB 4666617..4667381 (-) 765 WP_046049062.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QFX16_RS21545 - 4667378..4667563 (-) 186 WP_007945752.1 Trm112 family protein -
  QFX16_RS21550 lpxK 4667589..4668599 (-) 1011 WP_283181267.1 tetraacyldisaccharide 4'-kinase -
  QFX16_RS21555 - 4668599..4669030 (-) 432 WP_283181268.1 biopolymer transporter ExbD -
  QFX16_RS21560 exbB 4669027..4669662 (-) 636 WP_283181269.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QFX16_RS21565 comA 4669760..4671982 (-) 2223 WP_283181270.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFX16_RS21570 - 4672118..4672636 (+) 519 WP_283181271.1 DUF2062 domain-containing protein -
  QFX16_RS21575 - 4672775..4673554 (-) 780 WP_283181272.1 ABC transporter permease -
  QFX16_RS21580 - 4673551..4674483 (-) 933 WP_033056918.1 ABC transporter ATP-binding protein -
  QFX16_RS21585 - 4674617..4675240 (-) 624 WP_283181273.1 glutathione S-transferase family protein -
  QFX16_RS21590 - 4675284..4675943 (-) 660 WP_283181274.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 81852.40 Da        Isoelectric Point: 10.2839

>NTDB_id=831951 QFX16_RS21565 WP_283181270.1 4669760..4671982(-) (comA) [Pseudomonas svalbardensis strain PMCC 200367]
MRTGMMALALGLLILRFLPVLPPVWLWLLLPVMGLMALPFRTYPLAFFLFGFSWACANAQWALDDRLPMSLDSETRWVEG
RVTGLPQINEAVVRFELADARSRHGKVPKLLRLAWYDGPPVKSGEHWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKAGERLKEAQWAWRDGIRQRLQSVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLTRYGLWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPVANLLAVPWISLVVLPPAL
LGTLFLPLPYVGEGLLWLAGGLIDLLFKGLTLMAGYLPAWVPVAIPLWIWALGTFGAFLLLMPRGVPFRSLGWPMLLLLV
FPPRQVLPEGIAEVWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPTLRKLGVNGLDLMLISHADADHAGGA
RAVANGLPVKRVVSGDPLALPAELQAEGCESGKQWVWDDVRFQLWQWSSASDSNQKSCVLQIEANGERLLLTGDIDTVAE
RALLDSPLAVTTDWLQAPHHGSRSSSSMALLTGLQPKAVLISRGQGNSFGHPHPTIMARYRKRGMSIHDSAEQGAIRLQL
GRFKPPWTMRQERRFWRSVQ

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=831951 QFX16_RS21565 WP_283181270.1 4669760..4671982(-) (comA) [Pseudomonas svalbardensis strain PMCC 200367]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGTTGATCTTGCGTTTTTTACCGGTACTACCGCCGGTCTGGTTGTG
GCTGTTGTTGCCAGTCATGGGATTGATGGCGCTGCCGTTCAGGACTTATCCGTTGGCGTTTTTCCTGTTCGGATTCAGTT
GGGCGTGCGCGAATGCACAGTGGGCGCTGGATGATCGGCTGCCGATGAGCCTCGATAGCGAAACCCGTTGGGTCGAAGGT
CGGGTGACGGGATTGCCGCAGATCAATGAGGCCGTCGTGCGTTTCGAGTTGGCGGACGCCCGGTCGCGACATGGGAAGGT
GCCGAAACTTCTGCGCCTGGCCTGGTATGACGGGCCGCCGGTCAAGAGCGGCGAACATTGGCGACTGGCGGTCAAGTTGA
AGCGTCCTGCGGGGCTGCTCAATCCCCATGCCTTCGATTACGACGCCTGGCTGTTGGCGCAACGCATCGGCGCTACCGGG
ACGGTCAAGGCTGGCGAGCGGCTCAAGGAAGCCCAATGGGCCTGGCGCGACGGCATCCGTCAGCGCTTGCAGTCCGTGGA
TGCCCAGGGACGAACGGGAGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGACTGAGTCGCGAAGACTGGCAGGTGC
TGCAAGACACCGGCACCGTCCATCTGTTGGTGATTTCCGGACAACACATCGGGTTGTTGGCAGGGCTGGTGTATCTGTTG
ATTGCCGGGCTGACCCGTTATGGCCTGTGGCCGAAACGCTTGCCTTGGCTGCCGTGGGCCTGTGGACTCGCGTTCGCGGC
CGCTCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGGGCCTGCGTGATGATCGGTCTGGTGCTGTTGT
GGCGCCTGCGATTTCGTCACCTCGGCGCCTGGTGGCCGTTGTTGCTGGCGCTCGACGGTGTTTTGCTGCTGGATCCGCTG
GCGAGTCTGCAACCGGGTTTCTGGCTGTCGTTCGCGGCGGTGGCGGTGTTGATCTTCACCTTCGGTGGTCGGCTGGGCCC
ATGGCGTTGGTGGCAAACGTGGACCCGTGCCCAATGGCTGATCGCGATTGGTCTGTGCCCGTTGCTGCTGGTGCTCGGGT
TGCCGATCAGTCTCAGCGGGCCGGTGGCCAATTTGCTCGCGGTGCCGTGGATCAGCCTGGTCGTGCTGCCTCCGGCATTG
CTGGGTACGTTGTTTTTACCCCTTCCTTACGTGGGCGAAGGGTTGCTGTGGTTGGCAGGAGGTTTGATCGACCTCTTGTT
CAAGGGCCTGACGCTGATGGCCGGGTATTTACCCGCGTGGGTGCCGGTGGCCATCCCGTTGTGGATATGGGCACTCGGCA
CATTCGGTGCCTTTCTACTATTAATGCCTCGGGGTGTGCCGTTTCGCTCGTTGGGTTGGCCGATGCTGTTGTTGCTGGTT
TTTCCACCCCGGCAGGTCTTGCCTGAAGGCATCGCCGAAGTTTGGCAGCTGGATGTCGGCCAGGGTTTGGCCATCCTGGT
GCGCACCCGTCATCACACACTGTTGTATGACACCGGGCCACGTTTCGGCGATTTCGACCTGGGCGAGCGGGTGGTGCTGC
CGACTTTACGCAAACTGGGCGTGAATGGACTCGATTTGATGTTGATCAGCCATGCTGACGCCGATCATGCGGGCGGCGCC
CGGGCCGTTGCCAATGGCCTGCCGGTGAAACGGGTGGTCAGTGGCGATCCCCTGGCGCTGCCGGCCGAATTGCAGGCAGA
AGGCTGCGAGAGCGGCAAGCAATGGGTCTGGGATGATGTGAGGTTCCAGCTCTGGCAGTGGTCTTCGGCCAGCGACAGCA
ATCAAAAATCCTGCGTCCTGCAGATAGAAGCCAACGGTGAGCGTCTGTTATTGACCGGTGATATAGACACCGTAGCCGAG
CGGGCACTGCTCGACAGTCCACTCGCCGTCACCACCGATTGGTTGCAGGCACCGCACCACGGCAGTCGCAGCTCATCTTC
CATGGCGCTGCTTACCGGGCTGCAACCCAAAGCAGTGCTGATCTCCCGCGGCCAGGGCAATTCATTCGGTCATCCCCATC
CCACGATCATGGCGCGCTATCGAAAGCGTGGCATGTCGATCCATGACAGCGCCGAACAGGGTGCCATCCGTCTGCAACTG
GGACGCTTCAAGCCGCCATGGACGATGCGTCAAGAACGGCGTTTCTGGCGCTCTGTGCAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.57

96.757

0.605
  comA Ralstonia pseudosolanacearum GMI1000

32.699

100

0.372