Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QFX16_RS21560 Genome accession   NZ_CP125619
Coordinates   4669027..4669662 (-) Length   211 a.a.
NCBI ID   WP_283181269.1    Uniprot ID   -
Organism   Pseudomonas svalbardensis strain PMCC 200367     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4664027..4674662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX16_RS21525 - 4664419..4664892 (-) 474 WP_283181264.1 (2Fe-2S)-binding protein -
  QFX16_RS21530 murB 4665137..4666156 (-) 1020 WP_283181265.1 UDP-N-acetylmuramate dehydrogenase -
  QFX16_RS21535 - 4666153..4666617 (-) 465 WP_283181266.1 low molecular weight protein-tyrosine-phosphatase -
  QFX16_RS21540 kdsB 4666617..4667381 (-) 765 WP_046049062.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QFX16_RS21545 - 4667378..4667563 (-) 186 WP_007945752.1 Trm112 family protein -
  QFX16_RS21550 lpxK 4667589..4668599 (-) 1011 WP_283181267.1 tetraacyldisaccharide 4'-kinase -
  QFX16_RS21555 - 4668599..4669030 (-) 432 WP_283181268.1 biopolymer transporter ExbD -
  QFX16_RS21560 exbB 4669027..4669662 (-) 636 WP_283181269.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QFX16_RS21565 comA 4669760..4671982 (-) 2223 WP_283181270.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QFX16_RS21570 - 4672118..4672636 (+) 519 WP_283181271.1 DUF2062 domain-containing protein -
  QFX16_RS21575 - 4672775..4673554 (-) 780 WP_283181272.1 ABC transporter permease -
  QFX16_RS21580 - 4673551..4674483 (-) 933 WP_033056918.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22928.09 Da        Isoelectric Point: 7.3616

>NTDB_id=831950 QFX16_RS21560 WP_283181269.1 4669027..4669662(-) (exbB) [Pseudomonas svalbardensis strain PMCC 200367]
MWELVKSGGWMMIPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLNGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831950 QFX16_RS21560 WP_283181269.1 4669027..4669662(-) (exbB) [Pseudomonas svalbardensis strain PMCC 200367]
GTGTGGGAATTGGTCAAATCCGGCGGATGGATGATGATACCGATCATTCTGAGTTCCATCGCAGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCAACTCGCCGCTGGGCGAAATCCTGGCTGCCGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATAGAAGAAGCCGCCGCGCGAGTGGTTCACGAGCTCGAACGCTACAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGTCTGTTGGGGACGGTGTTGGGCATGATCGATATCTTCA
GCGCATTCATGGGTTCGGGCATGACCACTAACGCTGCCGTGTTGGCCGGTGGTATCTCCAAGGCCCTGATTACTACGGCC
GCAGGCCTGATGGTCGGCATCCCGGCGGTATTCTTCCACCGGTTCCTGCAACGCAGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTTGTCGAGGTGGTGCAGGGCGACCGTGATGTTGACCTGAATGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848