Detailed information NTG0831928

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QFW87_RS25245
• Genome accession: NZ_CP125618
• Coordinates: 5514624..5515964 (+)
• Length: 446 a.a.
• NCBI ID: WP_283181720.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PMCC200344
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5509624..5520964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFW87_RS25225	-	5510226..5511248 (+)	1023	WP_283189150.1	outer membrane protein assembly factor BamD	-
QFW87_RS25230	-	5511369..5512700 (+)	1332	WP_283182085.1	IS4 family transposase	-
QFW87_RS25235	-	5512809..5513042 (+)	234	WP_008154904.1	PP0621 family protein	-
QFW87_RS25240	pilS	5513032..5514621 (+)	1590	WP_283189151.1	ATP-binding protein	Regulator
QFW87_RS25245	pilR	5514624..5515964 (+)	1341	WP_283181720.1	sigma-54 dependent transcriptional regulator	Regulator
QFW87_RS25250	-	5516065..5517026 (-)	962	Protein_4967	IS110 family transposase	-
QFW87_RS25255	thiO	5517291..5518391 (-)	1101	WP_283181721.1	glycine oxidase ThiO	-
QFW87_RS25260	-	5518448..5518849 (-)	402	WP_283181722.1	type IV pilin protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49722.98 Da
• Isoelectric Point: 6.5105

>NTDB_id=831928 QFW87_RS25245 WP_283181720.1 5514624..5515964(+) (pilR) [Pseudomonas sp. PMCC200344]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLSRETFDLCLTDMRLPDGTGLELVQHIQQRHPNVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSSALRLPAPGGTGIAIDRRLLGDSPPMRALRKHIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRGVGEQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIESLASH
VLKRLAISTGQPAAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPEGGVPDLTQIDNLE
DYLENVERNLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=831928 QFW87_RS25245 WP_283181720.1 5514624..5515964(+) (pilR) [Pseudomonas sp. PMCC200344]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGTGCCCGCAACCTCGGCGAAGCCCAGGCCCTGCTGTCGCGAGAGACGTTCGATTTGTGCCTGA
CCGACATGCGCTTGCCGGACGGCACCGGCCTTGAGCTGGTGCAACACATCCAGCAACGCCACCCAAACGTACCGGTGGCA
ATGATCACCGCTTACGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGCGCGTTCGACTTCCTGACCAAACCGGT
GGACCTCACTCGCCTGCGGGAACTGGTCAGCAGCGCACTTCGGTTGCCTGCGCCGGGCGGCACCGGCATCGCCATCGATC
GCCGGCTGCTGGGCGATTCACCGCCGATGCGCGCCTTGCGCAAACACATCGACAAACTGGCCCGCAGCCAGGCGCCGGTG
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAATTGGTTGCGCGACTGATCCATGAGCAAGGACCGCGCGCCAGCCAACC
GTTTGTCCCGGTCAATTGCGGGGCGATTCCGTCGGAATTGATGGAGAGCGAATTTTTCGGGCATCGCAAAGGCAGCTTCA
GCGGTGCCATCGAAGACAAACCCGGACTGTTCCAGGCTGCCCATGGCGGCACCCTGTTCCTAGACGAAGTGGCAGATTTG
CCGCTGGCGATGCAGGTCAAACTGCTACGGGCAATACAGGAAAAAGCCGTTCGCGGTGTCGGCGAGCAACAGGAAACCGT
GGTCGACGTGCGTATCCTTTGCGCCACCCACAAAGACCTCGACGCCGAAGTCGCCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATTGAACTACGGGTGCCGCCCTTGCGCGAACGCCGTGACGACATCGAATCCCTCGCCAGCCAT
GTGCTCAAACGCTTGGCCATCAGCACTGGCCAACCCGCCGCAAAACTCCACCCCCAAGCCCTCGACGCGCTGAAAAGCTA
CCGCTTCCCCGGCAACGTGCGGGAACTGGAGAACATGCTCGAACGGGCGCACACGTTGTGCGAAAACAAACAGATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGCAACTGCAACCCGGAAGGTGGTGTGCCGGACCTGACACAGATCGACAACCTGGAA
GACTACCTGGAAAACGTCGAACGCAACCTTATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACTGCGGCGGCTCA
GCGGTTGAATTTATCGTTTCGGTCGATGCGCTACAGGCTGAAGAAATTCGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	99.327	0.789
pilR	Acinetobacter baumannii strain A118	49.673	100	0.511