Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QFW87_RS25240 Genome accession   NZ_CP125618
Coordinates   5513032..5514621 (+) Length   529 a.a.
NCBI ID   WP_283189151.1    Uniprot ID   -
Organism   Pseudomonas sp. PMCC200344     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5508032..5519621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS25215 pgeF 5508390..5509115 (-) 726 WP_283189149.1 peptidoglycan editing factor PgeF -
  QFW87_RS25220 rluD 5509112..5510074 (-) 963 WP_046048807.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QFW87_RS25225 - 5510226..5511248 (+) 1023 WP_283189150.1 outer membrane protein assembly factor BamD -
  QFW87_RS25230 - 5511369..5512700 (+) 1332 WP_283182085.1 IS4 family transposase -
  QFW87_RS25235 - 5512809..5513042 (+) 234 WP_008154904.1 PP0621 family protein -
  QFW87_RS25240 pilS 5513032..5514621 (+) 1590 WP_283189151.1 ATP-binding protein Regulator
  QFW87_RS25245 pilR 5514624..5515964 (+) 1341 WP_283181720.1 sigma-54 dependent transcriptional regulator Regulator
  QFW87_RS25250 - 5516065..5517026 (-) 962 Protein_4967 IS110 family transposase -
  QFW87_RS25255 thiO 5517291..5518391 (-) 1101 WP_283181721.1 glycine oxidase ThiO -
  QFW87_RS25260 - 5518448..5518849 (-) 402 WP_283181722.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58587.54 Da        Isoelectric Point: 6.9040

>NTDB_id=831927 QFW87_RS25240 WP_283189151.1 5513032..5514621(+) (pilS) [Pseudomonas sp. PMCC200344]
MIAETSSPGSKQAQRLLRLYHLYRLSIGITLVLLISSNMDNQLLTFSNDDLLRSGSWFYLVLNILLVVFLGNTRRPAQLF
SLALSDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVGALGIVGLSFLLSFSHPATPNDYLQVGTLG
ALCFAAALLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDDKRRVQLANHSALNLLGRENLAGQLID
DYLPSLVERLQLWLNNPTLRPQSLKVASSGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLQESEELNRADRRLTQIIQDQSQRMNRVIENVLQLSRRQQTVALRLDLKPWLEQFVNETREGATEH
QQIHLRIGSGDFKTLMDPDQLTQILDNLLRNAWRHSALNHELAQVWLELFVDPDSQLPILEILDDGPGVAPEHHVHLFEP
FFTTSPQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=831927 QFW87_RS25240 WP_283189151.1 5513032..5514621(+) (pilS) [Pseudomonas sp. PMCC200344]
GTGATCGCTGAGACCTCCAGTCCCGGCAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTTTACCGTTTGAGCAT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAATCAGCTGCTGACGTTCAGCAATGACGACCTGCTGCGCA
GTGGCAGCTGGTTTTACCTGGTGCTGAATATCCTGCTGGTGGTATTCCTCGGGAACACCCGGCGCCCGGCGCAACTGTTC
AGCCTGGCGCTGTCCGACGTCCTGCTGCTGTGCGGTCTGTTCTACGCCGCCGGCGGTGTGGCCAGCGCCATCGGCAACTT
GCTGATCGTATCGGTAGCCATCAGTAACACCTTGTTGCGCGGGCGCATCGGCCTGCTGATTGCCGCCGTTGGCGCGCTTG
GCATCGTCGGGCTGAGCTTCCTCCTGAGTTTCAGCCATCCCGCCACCCCCAACGATTACCTGCAAGTCGGCACGCTCGGC
GCCTTGTGTTTTGCTGCGGCATTGCTGGTGCAAGGGCTGATCCGACGCCTGGAGGTCAGCGAAACCCTCGCCGAACAACG
GGCCAGCGAAGTCGTCGGCCTCGAAGCCCTCAACGCCCTGATTCTGCAACGCATGCGTACCGGCATCCTGGTACTCGACG
ACAAGCGGCGGGTTCAACTGGCCAACCACAGCGCCTTGAACCTGTTAGGCAGGGAAAATCTTGCAGGCCAGCTGATCGAC
GACTACTTACCCAGCCTGGTCGAACGCCTGCAACTGTGGCTCAACAATCCGACGCTGCGCCCCCAGAGCCTGAAAGTCGC
CAGTAGTGGTCTGGAGCTGCAACCGAGCTTCATTGCCCTGGACCAAAGCCCTCACCACCAGACCCTGGTTTTTCTCGAAG
ACCTCGCGCAAATCGCTCAACAAGCCCAGCAATTGAAGCTCGCCGCCCTCGGTCGCCTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCGTTAGTCATGCCGCGCAGCTATTGCAGGAATCAGAGGAACTGAACCGCGCGGATCGACG
TCTGACACAGATTATTCAAGACCAATCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTAGCGCTACGGCTTGATCTGAAGCCGTGGCTGGAGCAGTTCGTCAACGAAACCCGCGAGGGGGCGACCGAGCAT
CAGCAGATTCATCTGCGCATTGGCTCAGGGGACTTCAAAACCCTGATGGATCCAGACCAGCTGACCCAGATTCTCGACAA
TCTGTTGCGCAATGCCTGGCGCCATAGCGCCTTGAATCACGAACTGGCGCAGGTCTGGCTCGAGTTGTTCGTCGACCCGG
ACAGCCAGCTACCGATCCTCGAGATCCTGGACGATGGCCCCGGCGTGGCACCGGAGCATCATGTGCACTTGTTCGAACCG
TTCTTCACCACCAGCCCCCAAGGCACCGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605