Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   QMK16_RS07470 Genome accession   NZ_CP125396
Coordinates   1443450..1444631 (-) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain SKBC57     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1438450..1449631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS07440 (QMK16_07440) - 1438994..1439335 (+) 342 WP_002851191.1 hypothetical protein -
  QMK16_RS07445 (QMK16_07445) flgM 1439398..1439595 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMK16_RS07450 (QMK16_07450) - 1439638..1440072 (+) 435 WP_002779263.1 flagellar protein FlgN -
  QMK16_RS07455 (QMK16_07455) flgK 1440082..1441908 (+) 1827 WP_002851396.1 flagellar hook-associated protein FlgK -
  QMK16_RS07460 (QMK16_07460) - 1441925..1442689 (+) 765 WP_002851318.1 TIGR02757 family protein -
  QMK16_RS07465 (QMK16_07465) - 1442693..1443457 (+) 765 WP_002851426.1 TSUP family transporter -
  QMK16_RS07470 (QMK16_07470) ctsF 1443450..1444631 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  QMK16_RS07475 (QMK16_07475) ctsE 1444628..1446187 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  QMK16_RS07480 (QMK16_07480) ctsX 1446177..1446764 (-) 588 WP_002851370.1 membrane protein Machinery gene
  QMK16_RS07485 (QMK16_07485) ctsP 1446768..1447376 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMK16_RS07490 (QMK16_07490) ctsD 1447369..1448787 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK16_RS07495 (QMK16_07495) ctsR 1448759..1449077 (-) 319 Protein_1459 transformation system protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=831903 QMK16_RS07470 WP_002851165.1 1443450..1444631(-) (ctsF) [Campylobacter jejuni strain SKBC57]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=831903 QMK16_RS07470 WP_002851165.1 1443450..1444631(-) (ctsF) [Campylobacter jejuni strain SKBC57]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCCATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99