Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   QMK16_RS07485 Genome accession   NZ_CP125396
Coordinates   1446768..1447376 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain SKBC57     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441768..1452376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS07460 (QMK16_07460) - 1441925..1442689 (+) 765 WP_002851318.1 TIGR02757 family protein -
  QMK16_RS07465 (QMK16_07465) - 1442693..1443457 (+) 765 WP_002851426.1 TSUP family transporter -
  QMK16_RS07470 (QMK16_07470) ctsF 1443450..1444631 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  QMK16_RS07475 (QMK16_07475) ctsE 1444628..1446187 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  QMK16_RS07480 (QMK16_07480) ctsX 1446177..1446764 (-) 588 WP_002851370.1 membrane protein Machinery gene
  QMK16_RS07485 (QMK16_07485) ctsP 1446768..1447376 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMK16_RS07490 (QMK16_07490) ctsD 1447369..1448787 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK16_RS07495 (QMK16_07495) ctsR 1448759..1449077 (-) 319 Protein_1459 transformation system protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=831906 QMK16_RS07485 WP_002851464.1 1446768..1447376(-) (ctsP) [Campylobacter jejuni strain SKBC57]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=831906 QMK16_RS07485 WP_002851464.1 1446768..1447376(-) (ctsP) [Campylobacter jejuni strain SKBC57]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995