Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   U0535_RS17200 Genome accession   NZ_CP139846
Coordinates   2921319..2922083 (+) Length   254 a.a.
NCBI ID   WP_001136198.1    Uniprot ID   -
Organism   Escherichia coli strain Nord58     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2916319..2927083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0535_RS17180 (U0535_17180) acpT 2917273..2917860 (+) 588 WP_000285781.1 4'-phosphopantetheinyl transferase AcpT -
  U0535_RS17185 (U0535_17185) nikA 2917971..2919545 (+) 1575 WP_000953368.1 nickel ABC transporter substrate-binding protein -
  U0535_RS17190 (U0535_17190) nikB 2919545..2920489 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  U0535_RS17195 (U0535_17195) nikC 2920486..2921319 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  U0535_RS17200 (U0535_17200) amiE 2921319..2922083 (+) 765 WP_001136198.1 nickel import ATP-binding protein NikD Regulator
  U0535_RS17205 (U0535_17205) nikE 2922080..2922886 (+) 807 WP_001521512.1 nickel import ATP-binding protein NikE -
  U0535_RS17210 (U0535_17210) nikR 2922891..2923292 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26843.46 Da        Isoelectric Point: 6.6886

>NTDB_id=831905 U0535_RS17200 WP_001136198.1 2921319..2922083(+) (amiE) [Escherichia coli strain Nord58]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=831905 U0535_RS17200 WP_001136198.1 2921319..2922083(+) (amiE) [Escherichia coli strain Nord58]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402