Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   QMK12_RS06850 Genome accession   NZ_CP125395
Coordinates   1358189..1358776 (-) Length   195 a.a.
NCBI ID   WP_002936491.1    Uniprot ID   A0A5C7EMF2
Organism   Campylobacter jejuni strain SKBC94     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1353189..1363776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS06825 (QMK12_06825) - 1353242..1354006 (+) 765 WP_070297962.1 TSUP family transporter -
  QMK12_RS06830 (QMK12_06830) - 1354154..1355194 (-) 1041 WP_087695530.1 hypothetical protein -
  QMK12_RS06835 (QMK12_06835) - 1355290..1355424 (+) 135 WP_257841183.1 hypothetical protein -
  QMK12_RS06840 (QMK12_06840) ctsF 1355462..1356643 (-) 1182 WP_070316801.1 type II secretion system F family protein Machinery gene
  QMK12_RS06845 (QMK12_06845) ctsE 1356640..1358199 (-) 1560 WP_134240005.1 GspE/PulE family protein Machinery gene
  QMK12_RS06850 (QMK12_06850) ctsX 1358189..1358776 (-) 588 WP_002936491.1 hypothetical protein Machinery gene
  QMK12_RS06855 (QMK12_06855) ctsP 1358780..1359388 (-) 609 WP_070316799.1 ATP-binding protein Machinery gene
  QMK12_RS06860 (QMK12_06860) ctsD 1359381..1360793 (-) 1413 WP_087695531.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK12_RS06865 (QMK12_06865) ctsR 1360771..1361082 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23345.40 Da        Isoelectric Point: 9.8409

>NTDB_id=831877 QMK12_RS06850 WP_002936491.1 1358189..1358776(-) (ctsX) [Campylobacter jejuni strain SKBC94]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=831877 QMK12_RS06850 WP_002936491.1 1358189..1358776(-) (ctsX) [Campylobacter jejuni strain SKBC94]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATCTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7EMF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

99.487

100

0.995