Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   QMK12_RS06840 Genome accession   NZ_CP125395
Coordinates   1355462..1356643 (-) Length   393 a.a.
NCBI ID   WP_070316801.1    Uniprot ID   A0A5T0PWT7
Organism   Campylobacter jejuni strain SKBC94     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1350462..1361643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS06815 (QMK12_06815) flgK 1350631..1352457 (+) 1827 WP_134240002.1 flagellar hook-associated protein FlgK -
  QMK12_RS06820 (QMK12_06820) - 1352474..1353238 (+) 765 WP_134240003.1 TIGR02757 family protein -
  QMK12_RS06825 (QMK12_06825) - 1353242..1354006 (+) 765 WP_070297962.1 TSUP family transporter -
  QMK12_RS06830 (QMK12_06830) - 1354154..1355194 (-) 1041 WP_087695530.1 hypothetical protein -
  QMK12_RS06835 (QMK12_06835) - 1355290..1355424 (+) 135 WP_257841183.1 hypothetical protein -
  QMK12_RS06840 (QMK12_06840) ctsF 1355462..1356643 (-) 1182 WP_070316801.1 type II secretion system F family protein Machinery gene
  QMK12_RS06845 (QMK12_06845) ctsE 1356640..1358199 (-) 1560 WP_134240005.1 GspE/PulE family protein Machinery gene
  QMK12_RS06850 (QMK12_06850) ctsX 1358189..1358776 (-) 588 WP_002936491.1 hypothetical protein Machinery gene
  QMK12_RS06855 (QMK12_06855) ctsP 1358780..1359388 (-) 609 WP_070316799.1 ATP-binding protein Machinery gene
  QMK12_RS06860 (QMK12_06860) ctsD 1359381..1360793 (-) 1413 WP_087695531.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK12_RS06865 (QMK12_06865) ctsR 1360771..1361082 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45786.49 Da        Isoelectric Point: 9.2580

>NTDB_id=831875 QMK12_RS06840 WP_070316801.1 1355462..1356643(-) (ctsF) [Campylobacter jejuni strain SKBC94]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIINIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLETQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGINFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=831875 QMK12_RS06840 WP_070316801.1 1355462..1356643(-) (ctsF) [Campylobacter jejuni strain SKBC94]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTAATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCCTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGACTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCGGGTATAAATTTTATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0PWT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.214

99.746

0.98