Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   QMK12_RS06865 Genome accession   NZ_CP125395
Coordinates   1360771..1361082 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC94     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355771..1366082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS06845 (QMK12_06845) ctsE 1356640..1358199 (-) 1560 WP_134240005.1 GspE/PulE family protein Machinery gene
  QMK12_RS06850 (QMK12_06850) ctsX 1358189..1358776 (-) 588 WP_002936491.1 hypothetical protein Machinery gene
  QMK12_RS06855 (QMK12_06855) ctsP 1358780..1359388 (-) 609 WP_070316799.1 ATP-binding protein Machinery gene
  QMK12_RS06860 (QMK12_06860) ctsD 1359381..1360793 (-) 1413 WP_087695531.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK12_RS06865 (QMK12_06865) ctsR 1360771..1361082 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  QMK12_RS06870 (QMK12_06870) nifJ 1361106..1364666 (-) 3561 WP_283155485.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  QMK12_RS06875 (QMK12_06875) - 1364759..1365400 (-) 642 WP_088303596.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=831880 QMK12_RS06865 WP_002862131.1 1360771..1361082(-) (ctsR) [Campylobacter jejuni strain SKBC94]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=831880 QMK12_RS06865 WP_002862131.1 1360771..1361082(-) (ctsR) [Campylobacter jejuni strain SKBC94]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99