Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   QMK13_RS07420 Genome accession   NZ_CP125390
Coordinates   1449827..1450414 (-) Length   195 a.a.
NCBI ID   WP_283151929.1    Uniprot ID   A0A695WKG8
Organism   Campylobacter jejuni strain SKBC9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1444827..1455414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK13_RS07400 (QMK13_07400) - 1445575..1446339 (+) 765 WP_002936487.1 TIGR02757 family protein -
  QMK13_RS07405 (QMK13_07405) - 1446343..1447107 (+) 765 WP_002855301.1 TSUP family transporter -
  QMK13_RS07410 (QMK13_07410) ctsF 1447100..1448281 (-) 1182 WP_283151928.1 type II secretion system F family protein Machinery gene
  QMK13_RS07415 (QMK13_07415) ctsE 1448278..1449837 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  QMK13_RS07420 (QMK13_07420) ctsX 1449827..1450414 (-) 588 WP_283151929.1 transformation system protein Machinery gene
  QMK13_RS07425 (QMK13_07425) ctsP 1450418..1451026 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK13_RS07430 (QMK13_07430) ctsD 1451019..1452431 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK13_RS07435 (QMK13_07435) ctsR 1452409..1452720 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23344.42 Da        Isoelectric Point: 9.9100

>NTDB_id=831850 QMK13_RS07420 WP_283151929.1 1449827..1450414(-) (ctsX) [Campylobacter jejuni strain SKBC9]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELNKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=831850 QMK13_RS07420 WP_283151929.1 1449827..1450414(-) (ctsX) [Campylobacter jejuni strain SKBC9]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTAACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A695WKG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99