Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   QMK13_RS07410 Genome accession   NZ_CP125390
Coordinates   1447100..1448281 (-) Length   393 a.a.
NCBI ID   WP_283151928.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC9     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442100..1453281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK13_RS07380 (QMK13_07380) - 1442645..1442986 (+) 342 WP_002784057.1 hypothetical protein -
  QMK13_RS07385 (QMK13_07385) flgM 1443049..1443246 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMK13_RS07390 (QMK13_07390) - 1443288..1443722 (+) 435 WP_002779263.1 flagellar protein FlgN -
  QMK13_RS07395 (QMK13_07395) flgK 1443732..1445558 (+) 1827 WP_057100486.1 flagellar hook-associated protein FlgK -
  QMK13_RS07400 (QMK13_07400) - 1445575..1446339 (+) 765 WP_002936487.1 TIGR02757 family protein -
  QMK13_RS07405 (QMK13_07405) - 1446343..1447107 (+) 765 WP_002855301.1 TSUP family transporter -
  QMK13_RS07410 (QMK13_07410) ctsF 1447100..1448281 (-) 1182 WP_283151928.1 type II secretion system F family protein Machinery gene
  QMK13_RS07415 (QMK13_07415) ctsE 1448278..1449837 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  QMK13_RS07420 (QMK13_07420) ctsX 1449827..1450414 (-) 588 WP_283151929.1 transformation system protein Machinery gene
  QMK13_RS07425 (QMK13_07425) ctsP 1450418..1451026 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK13_RS07430 (QMK13_07430) ctsD 1451019..1452431 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK13_RS07435 (QMK13_07435) ctsR 1452409..1452720 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=831848 QMK13_RS07410 WP_283151928.1 1447100..1448281(-) (ctsF) [Campylobacter jejuni strain SKBC9]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=831848 QMK13_RS07410 WP_283151928.1 1447100..1448281(-) (ctsF) [Campylobacter jejuni strain SKBC9]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTGTCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAGATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGTTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGCTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987