Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   QMK13_RS07435 Genome accession   NZ_CP125390
Coordinates   1452409..1452720 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC9     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447409..1457720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK13_RS07415 (QMK13_07415) ctsE 1448278..1449837 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  QMK13_RS07420 (QMK13_07420) ctsX 1449827..1450414 (-) 588 WP_283151929.1 transformation system protein Machinery gene
  QMK13_RS07425 (QMK13_07425) ctsP 1450418..1451026 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK13_RS07430 (QMK13_07430) ctsD 1451019..1452431 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK13_RS07435 (QMK13_07435) ctsR 1452409..1452720 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  QMK13_RS07440 (QMK13_07440) nifJ 1452744..1456304 (-) 3561 WP_002936499.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  QMK13_RS07445 (QMK13_07445) - 1456397..1457038 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=831853 QMK13_RS07435 WP_002862131.1 1452409..1452720(-) (ctsR) [Campylobacter jejuni strain SKBC9]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=831853 QMK13_RS07435 WP_002862131.1 1452409..1452720(-) (ctsR) [Campylobacter jejuni strain SKBC9]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99