Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   QMK08_RS07095 Genome accession   NZ_CP125386
Coordinates   1402861..1403448 (-) Length   195 a.a.
NCBI ID   WP_002867036.1    Uniprot ID   A0A5T1DZF0
Organism   Campylobacter jejuni strain SKBC41     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1397861..1408448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS07075 (QMK08_07075) - 1398609..1399373 (+) 765 WP_002877433.1 TIGR02757 family protein -
  QMK08_RS07080 (QMK08_07080) - 1399377..1400141 (+) 765 WP_002867032.1 TSUP family transporter -
  QMK08_RS07085 (QMK08_07085) ctsF 1400134..1401315 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  QMK08_RS07090 (QMK08_07090) ctsE 1401312..1402871 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  QMK08_RS07095 (QMK08_07095) ctsX 1402861..1403448 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  QMK08_RS07100 (QMK08_07100) ctsP 1403452..1404060 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK08_RS07105 (QMK08_07105) ctsD 1404053..1405465 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK08_RS07110 (QMK08_07110) ctsR 1405443..1405754 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23375.43 Da        Isoelectric Point: 9.8409

>NTDB_id=831768 QMK08_RS07095 WP_002867036.1 1402861..1403448(-) (ctsX) [Campylobacter jejuni strain SKBC41]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWTLKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=831768 QMK08_RS07095 WP_002867036.1 1402861..1403448(-) (ctsX) [Campylobacter jejuni strain SKBC41]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACACATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGACTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1DZF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99