Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   QMK08_RS07110 Genome accession   NZ_CP125386
Coordinates   1405443..1405754 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC41     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1400443..1410754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS07090 (QMK08_07090) ctsE 1401312..1402871 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  QMK08_RS07095 (QMK08_07095) ctsX 1402861..1403448 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  QMK08_RS07100 (QMK08_07100) ctsP 1403452..1404060 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK08_RS07105 (QMK08_07105) ctsD 1404053..1405465 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK08_RS07110 (QMK08_07110) ctsR 1405443..1405754 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  QMK08_RS07115 (QMK08_07115) nifJ 1405778..1409338 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  QMK08_RS07120 (QMK08_07120) - 1409431..1410072 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=831771 QMK08_RS07110 WP_002862131.1 1405443..1405754(-) (ctsR) [Campylobacter jejuni strain SKBC41]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=831771 QMK08_RS07110 WP_002862131.1 1405443..1405754(-) (ctsR) [Campylobacter jejuni strain SKBC41]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99