Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   QMK08_RS07085 Genome accession   NZ_CP125386
Coordinates   1400134..1401315 (-) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain SKBC41     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395134..1406315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS07055 (QMK08_07055) - 1395676..1396017 (+) 342 WP_002784057.1 hypothetical protein -
  QMK08_RS07060 (QMK08_07060) flgM 1396080..1396277 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMK08_RS07065 (QMK08_07065) - 1396322..1396756 (+) 435 WP_002826016.1 flagellar protein FlgN -
  QMK08_RS07070 (QMK08_07070) flgK 1396766..1398592 (+) 1827 WP_002867029.1 flagellar hook-associated protein FlgK -
  QMK08_RS07075 (QMK08_07075) - 1398609..1399373 (+) 765 WP_002877433.1 TIGR02757 family protein -
  QMK08_RS07080 (QMK08_07080) - 1399377..1400141 (+) 765 WP_002867032.1 TSUP family transporter -
  QMK08_RS07085 (QMK08_07085) ctsF 1400134..1401315 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  QMK08_RS07090 (QMK08_07090) ctsE 1401312..1402871 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  QMK08_RS07095 (QMK08_07095) ctsX 1402861..1403448 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  QMK08_RS07100 (QMK08_07100) ctsP 1403452..1404060 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK08_RS07105 (QMK08_07105) ctsD 1404053..1405465 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK08_RS07110 (QMK08_07110) ctsR 1405443..1405754 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=831766 QMK08_RS07085 WP_002851165.1 1400134..1401315(-) (ctsF) [Campylobacter jejuni strain SKBC41]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=831766 QMK08_RS07085 WP_002851165.1 1400134..1401315(-) (ctsF) [Campylobacter jejuni strain SKBC41]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99