Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QMK09_RS02515 Genome accession   NZ_CP125383
Coordinates   472389..473042 (-) Length   217 a.a.
NCBI ID   WP_052787805.1    Uniprot ID   A0A5Z1E8P6
Organism   Campylobacter jejuni strain SKBC1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 467389..478042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS02475 (QMK09_02475) - 468230..468457 (-) 228 WP_002826734.1 helix-turn-helix domain-containing protein -
  QMK09_RS02480 (QMK09_02480) - 468448..468705 (-) 258 WP_052773605.1 hypothetical protein -
  QMK09_RS02485 (QMK09_02485) - 468696..468965 (-) 270 WP_002783984.1 hypothetical protein -
  QMK09_RS02490 (QMK09_02490) - 469525..469797 (-) 273 WP_002865126.1 hypothetical protein -
  QMK09_RS02495 (QMK09_02495) - 469941..470672 (+) 732 WP_002861653.1 hypothetical protein -
  QMK09_RS02500 (QMK09_02500) - 470724..471095 (-) 372 WP_126267719.1 hypothetical protein -
  QMK09_RS02505 (QMK09_02505) - 471085..471648 (-) 564 WP_052787807.1 hypothetical protein -
  QMK09_RS02510 (QMK09_02510) - 471645..472307 (-) 663 WP_052787806.1 hypothetical protein -
  QMK09_RS02515 (QMK09_02515) CJE0566 472389..473042 (-) 654 WP_052787805.1 DNA/RNA non-specific endonuclease Regulator
  QMK09_RS02520 (QMK09_02520) - 473048..473755 (-) 708 WP_052805202.1 hypothetical protein -
  QMK09_RS02525 (QMK09_02525) - 473748..474536 (-) 789 WP_011049706.1 HipA family kinase -
  QMK09_RS02530 (QMK09_02530) - 474533..475267 (-) 735 WP_052787803.1 S24 family peptidase -
  QMK09_RS09420 - 475379..475597 (+) 219 WP_002826741.1 hypothetical protein -
  QMK09_RS02535 (QMK09_02535) - 475759..476124 (-) 366 WP_002874369.1 hypothetical protein -
  QMK09_RS02540 (QMK09_02540) - 476167..477168 (+) 1002 WP_126417994.1 hypothetical protein -
  QMK09_RS02545 (QMK09_02545) - 477179..477679 (+) 501 WP_283146554.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25493.10 Da        Isoelectric Point: 10.0127

>NTDB_id=831723 QMK09_RS02515 WP_052787805.1 472389..473042(-) (CJE0566) [Campylobacter jejuni strain SKBC1]
MKKLIILSLLTTLALADYSQYKPSEDFAKHFTKQNCSQVLDKFYYLNCYDYNLKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGSLEVL
NLVNYDNNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHKVNDENIRKYKIDCDKI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=831723 QMK09_RS02515 WP_052787805.1 472389..473042(-) (CJE0566) [Campylobacter jejuni strain SKBC1]
ATGAAAAAACTTATAATCTTATCATTATTGACAACTCTAGCCTTAGCTGATTATAGCCAATACAAACCAAGTGAAGATTT
TGCTAAGCATTTTACTAAGCAAAACTGCTCACAAGTTTTGGATAAGTTTTATTATCTAAATTGTTATGATTATAATCTTA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAACTTGGAAGTTTAGAGGTTTTG
AATTTAGTTAATTATGACAATAATCCACAAAGAATAAGAAATCAAATTGCCATTCCAAGCTCTTACACTAAGATTTTAAA
AGGCGAGAATTTTAAAGAATGTTACCAAGTGCCAAATCACAAAGTGAATGATGAGAATATAAGAAAATATAAGATTGATT
GTGATAAAATATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z1E8P6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

93.088

100

0.931
  CJE1441 Campylobacter jejuni RM1221

91.163

99.078

0.903