Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QMK57_RS17890 Genome accession   NZ_CP125381
Coordinates   4003082..4005307 (-) Length   741 a.a.
NCBI ID   WP_046035507.1    Uniprot ID   -
Organism   Pseudomonas marginalis strain PS92     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3998082..4010307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK57_RS17855 (QMK57_17840) murB 3998477..3999496 (-) 1020 WP_320399295.1 UDP-N-acetylmuramate dehydrogenase -
  QMK57_RS17860 (QMK57_17845) - 3999493..3999957 (-) 465 WP_012724907.1 low molecular weight protein-tyrosine-phosphatase -
  QMK57_RS17865 (QMK57_17850) kdsB 3999957..4000721 (-) 765 WP_012724908.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK57_RS17870 (QMK57_17855) - 4000718..4000903 (-) 186 WP_003174668.1 Trm112 family protein -
  QMK57_RS17875 (QMK57_17860) lpxK 4000928..4001938 (-) 1011 WP_320399296.1 tetraacyldisaccharide 4'-kinase -
  QMK57_RS17880 (QMK57_17865) - 4001938..4002366 (-) 429 WP_012724910.1 biopolymer transporter ExbD -
  QMK57_RS17885 (QMK57_17870) exbB 4002363..4002998 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK57_RS17890 (QMK57_17875) comA 4003082..4005307 (-) 2226 WP_046035507.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK57_RS17895 (QMK57_17880) - 4005443..4005958 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  QMK57_RS17900 (QMK57_17885) - 4005975..4006159 (-) 185 Protein_3557 helix-turn-helix domain-containing protein -
  QMK57_RS17905 (QMK57_17890) - 4006391..4009144 (+) 2754 WP_046035508.1 response regulator -
  QMK57_RS17910 (QMK57_17895) - 4009302..4010291 (+) 990 WP_320399297.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80554.62 Da        Isoelectric Point: 10.7948

>NTDB_id=831702 QMK57_RS17890 WP_046035507.1 4003082..4005307(-) (comA) [Pseudomonas marginalis strain PS92]
MRTGMFAFALGLLALRFLPALPATGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALDGQTRWVEG
WVTGLPQQTGEGVRFVLTDSRSRNARLPTRIRVSWRGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPARHAWRDNVRQRLMVVDAQGREAGLMALVLGDGSGLAATDWQVLQDTGTVHLLVISGQHIGLLAGLIYGV
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGVLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNAVLVLEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLPLPWVGDGLLWLAGGALDGLFNGLAWLAGYMPAWIPAEVPLGYWLVSLLGAVLLLLPKGVPFRLLGWPMLLLAV
FPPQERVPHGQVEVVQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVAALDLMLLSHADADHAGGA
AAIAKGLPIKRVVGGETDGLPAFLGTQPCISGERWTWDGVTFELWQWPGAISGNPKSCVLQVQANGERLLLTGDIDRAAE
QAMLASPLAVPTEWLQAPHHGSRSSSSWAFLERLAPGSVLISRGRGNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRVQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=831702 QMK57_RS17890 WP_046035507.1 4003082..4005307(-) (comA) [Pseudomonas marginalis strain PS92]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGCTGCTGGCCTTGCGTTTTCTACCGGCATTGCCGGCAACCGGCTGGCT
GATCGCCCTGCTGGTGCTGGCGTTGATGCTGTTGCCGTTTCGCACTTACCCCTTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCGTGCATCAGCGCACAGTGGGCCCTGGATGACCGCCTGCGGCCAGCGTTGGACGGCCAGACGCGTTGGGTGGAAGGG
TGGGTCACCGGTCTGCCGCAACAGACGGGCGAGGGCGTGCGTTTCGTACTGACCGACAGCCGGTCACGTAACGCGCGGTT
GCCTACACGCATCCGGGTGTCCTGGCGTGGCGGGCCGCCGGTGCGCAGCGGTGAACGCTGGCGCCTGGCGATTACTCTCA
AACGACCGGCCGGGTTGCTGAATTTCCACGGCTTTGATCAGGAAGCCTGGCTGCTGGCCCAGCGGATTGGCGCCACCGGT
ACGGTGAAGGACGGCGAGCGTCTGGCACCGGCCCGCCACGCCTGGCGTGACAACGTGCGCCAGCGCCTGATGGTGGTGGA
TGCCCAGGGCCGGGAAGCCGGCCTGATGGCCCTGGTATTGGGCGATGGTTCCGGATTGGCCGCTACCGATTGGCAGGTGT
TGCAGGACACCGGCACCGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTCGCGGGCTTGATCTACGGGGTG
ATCGCCGGGTTGGCGCGCTACGGCTGCTGGCCGCGAACCTGGCCGTGGCTGCCCTGGGCGTGCGGCCTGGCGTTCAGCGC
CGCGCTGGGTTACGGCGTGCTGGCAGGGTTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGGTTGGTGTTGTTGT
GGCGCTTGCGCTTCCGGCATCTGGGGCTGTGGTGGCCATTGCTGCTGGCACTCAATGCGGTGCTGGTCCTGGAGCCGTTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCGTTTGCGGCGGTGGCTGTGCTGGTCCTGGCGTTTGGCGGACGGCTGGGACC
GTGGAGCCTTTGGCAGGCGTGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGTCTTGCTGGTGCTGGGGC
TGCCTATCAGCCTCAGCGCACCGTTCGCTAATCTGGTTGCGGTGCCCTGGATCAGCCTGGTGGTATTGCCGCTGGCGTTG
CTGGGGACCGCGTTGCTGCCGCTGCCGTGGGTGGGTGATGGATTGCTGTGGCTGGCGGGCGGTGCGCTGGACGGCTTGTT
CAACGGCTTGGCGTGGCTGGCCGGGTACATGCCTGCCTGGATCCCGGCCGAGGTGCCGCTGGGCTACTGGCTGGTGAGTC
TGCTCGGTGCGGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGCTGTTACTGGCGGTG
TTTCCGCCGCAAGAACGGGTGCCCCATGGGCAGGTGGAGGTCGTGCAGCTGGATGTCGGGCAGGGACAGTCGCTGATTTT
GCGCACGCGTCACCACACTTTGCTGTATGACGCCGGTCCACGCTCCGGAACCTTTGACCTGGGCGCCCGCGTGGTGTTGC
CGTCGTTGCGAAAGCTTGGGGTAGCGGCCTTGGACCTGATGCTGCTCAGCCACGCCGACGCCGATCATGCCGGTGGTGCG
GCAGCGATTGCCAAGGGCCTGCCGATCAAGCGCGTGGTGGGTGGAGAAACCGACGGGCTGCCGGCGTTTCTCGGCACCCA
GCCGTGCATCAGTGGCGAGCGCTGGACCTGGGACGGCGTGACGTTCGAACTCTGGCAGTGGCCTGGCGCTATCAGTGGCA
ATCCGAAGTCTTGCGTGTTGCAGGTGCAGGCCAATGGCGAGCGCCTGCTGCTGACCGGCGACATTGACCGCGCCGCCGAA
CAGGCCATGCTCGCTTCCCCGCTGGCGGTGCCCACTGAATGGTTGCAAGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
GTGGGCGTTTCTGGAGCGCCTCGCCCCTGGTTCCGTGCTTATTTCACGGGGGCGGGGTAATGCGTTCGGTCATCCGCATC
CCCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACAGTGCCGAGCAGGGTGCTGTGCGCGTGCAATTG
GGCGCTTTCGCACCACCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.694

97.166

0.59
  comA Ralstonia pseudosolanacearum GMI1000

34.913

100

0.378