Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMK57_RS17885 Genome accession   NZ_CP125381
Coordinates   4002363..4002998 (-) Length   211 a.a.
NCBI ID   WP_012724911.1    Uniprot ID   A0A855QI08
Organism   Pseudomonas marginalis strain PS92     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3997363..4007998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK57_RS17850 (QMK57_17835) - 3997729..3998400 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  QMK57_RS17855 (QMK57_17840) murB 3998477..3999496 (-) 1020 WP_320399295.1 UDP-N-acetylmuramate dehydrogenase -
  QMK57_RS17860 (QMK57_17845) - 3999493..3999957 (-) 465 WP_012724907.1 low molecular weight protein-tyrosine-phosphatase -
  QMK57_RS17865 (QMK57_17850) kdsB 3999957..4000721 (-) 765 WP_012724908.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK57_RS17870 (QMK57_17855) - 4000718..4000903 (-) 186 WP_003174668.1 Trm112 family protein -
  QMK57_RS17875 (QMK57_17860) lpxK 4000928..4001938 (-) 1011 WP_320399296.1 tetraacyldisaccharide 4'-kinase -
  QMK57_RS17880 (QMK57_17865) - 4001938..4002366 (-) 429 WP_012724910.1 biopolymer transporter ExbD -
  QMK57_RS17885 (QMK57_17870) exbB 4002363..4002998 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK57_RS17890 (QMK57_17875) comA 4003082..4005307 (-) 2226 WP_046035507.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK57_RS17895 (QMK57_17880) - 4005443..4005958 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  QMK57_RS17900 (QMK57_17885) - 4005975..4006159 (-) 185 Protein_3557 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.02 Da        Isoelectric Point: 7.3613

>NTDB_id=831701 QMK57_RS17885 WP_012724911.1 4002363..4002998(-) (exbB) [Pseudomonas marginalis strain PS92]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831701 QMK57_RS17885 WP_012724911.1 4002363..4002998(-) (exbB) [Pseudomonas marginalis strain PS92]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AGCAGTTGGACAAGGACAAACTCAAGGAGCTGCGCGCCAATTCACCGTTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGTTTGCTGGGTACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCCGGCATGACTACCAACGCGGCCGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACGGCA
GCAGGCCTGATGGTGGGTATTCCTTCGGTATTCTTCCACCGTTTCCTGCAGCGTCGCATTGATGAACTGGTGGTGGGTAT
GGAACAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGATCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848