Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QMK52_RS18500 Genome accession   NZ_CP125376
Coordinates   4124354..4126579 (+) Length   741 a.a.
NCBI ID   WP_320403181.1    Uniprot ID   -
Organism   Pseudomonas sp. P9_2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4119354..4131579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK52_RS18485 (QMK52_18490) - 4121626..4122354 (+) 729 WP_005789059.1 response regulator transcription factor -
  QMK52_RS18490 (QMK52_18495) - 4122341..4123699 (+) 1359 WP_032880642.1 sensor histidine kinase -
  QMK52_RS18495 (QMK52_18500) - 4123703..4124218 (-) 516 WP_005789057.1 DUF2062 domain-containing protein -
  QMK52_RS18500 (QMK52_18505) comA 4124354..4126579 (+) 2226 WP_320403181.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK52_RS18505 (QMK52_18510) exbB 4126689..4127324 (+) 636 WP_005789055.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK52_RS18510 (QMK52_18515) - 4127321..4127749 (+) 429 WP_005789054.1 ExbD/TolR family protein -
  QMK52_RS18515 (QMK52_18520) lpxK 4127749..4128759 (+) 1011 WP_194438565.1 tetraacyldisaccharide 4'-kinase -
  QMK52_RS18520 (QMK52_18525) - 4128782..4128967 (+) 186 WP_003174668.1 Trm112 family protein -
  QMK52_RS18525 (QMK52_18530) kdsB 4128964..4129728 (+) 765 WP_320403182.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK52_RS18530 (QMK52_18535) - 4129728..4130192 (+) 465 WP_005789044.1 low molecular weight protein-tyrosine-phosphatase -
  QMK52_RS18535 (QMK52_18540) murB 4130189..4131208 (+) 1020 WP_320403183.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80287.42 Da        Isoelectric Point: 10.8009

>NTDB_id=831576 QMK52_RS18500 WP_320403181.1 4124354..4126579(+) (comA) [Pseudomonas sp. P9_2]
MKTGMFALALGLLVLRWLPALPSGAGLLAMLILALMLLPFRTYPVAFFLVGLSWACISAQWALDDRLQPALDGQTRWVQG
RVIGLPQQTGTGVRFELADSRSRNARLPKRIRVSWHGGPTVNSGEYWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGASA
TVKDGERLAPARNAWRDAVRQRLMAVEAHGREAGLAALVLGDGSGLAPEDWQVLQNTGTVHLLVISGQHIGLLAGLIYGL
IAMLARYGCWPRGWPWLPWACGLAFAGALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNGVLLIEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWSVWQIWTRPQWLIAIGLFPVLLVLGLPISLSAPAANLFAVPWISLVVLPLAL
LGTALLWVPLVGEGVLWLAGGALDGLFKGLALLAAQLPAWVPAEVPLRYWLVSLAGAVIVLLPKGLPFRVLGWPMLLVAV
FPPRDGVPHGQMEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLQKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLATQPCRSGEHWKWDGVAFELWQWPGAIEGNPKSCVLQVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQVPHHGSRSSSSWAFLQRLAPTAVLISRGRGNAFGHPHPQVLKRYQALGSRVYDSAEQGAVRLRL
GAFTPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=831576 QMK52_RS18500 WP_320403181.1 4124354..4126579(+) (comA) [Pseudomonas sp. P9_2]
ATGAAAACAGGGATGTTCGCGCTGGCGCTGGGGTTGCTGGTATTGCGCTGGTTACCCGCATTGCCGTCTGGCGCCGGGTT
GCTGGCCATGCTGATACTGGCCTTGATGCTGCTGCCTTTTCGCACCTATCCCGTGGCGTTTTTTCTGGTCGGCCTGAGTT
GGGCCTGCATCAGCGCACAGTGGGCGCTGGATGATCGATTGCAACCGGCGCTGGACGGGCAGACGCGCTGGGTACAAGGG
CGTGTCATCGGCTTGCCGCAGCAGACCGGCACGGGCGTGCGTTTCGAGTTGGCCGACAGTCGGTCGCGCAATGCACGGCT
GCCCAAACGTATCCGGGTGTCCTGGCACGGCGGGCCGACCGTAAACAGCGGCGAGTACTGGCGTCTGGCACTGACGCTCA
AGCGGCCCGCCGGCCTGCTCAATTTTCATGGCTTTGACCACGAAGCCTGGCTGCTGGCCCAGCGTATCGGCGCCAGCGCG
ACGGTGAAGGATGGTGAGCGCCTGGCGCCGGCGCGCAATGCCTGGCGTGATGCGGTTCGCCAGCGCCTGATGGCCGTGGA
AGCGCACGGCCGCGAGGCGGGCCTGGCGGCGTTGGTGCTGGGCGACGGTTCCGGGCTTGCACCTGAGGATTGGCAGGTGT
TGCAGAACACCGGCACGGTGCATCTGCTGGTGATTTCCGGACAGCACATTGGCTTGTTGGCGGGGTTGATCTACGGCTTG
ATCGCGATGTTGGCGCGCTATGGTTGCTGGCCGCGAGGCTGGCCATGGCTGCCATGGGCGTGCGGCTTGGCGTTTGCCGG
GGCGTTGGGCTATGGCCTGCTGGCAGGGTTCGGCGTGCCGGTGCAGCGGGCTTGTGTGATGGTGGGCCTGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGGGTGTGGTGGCCGTTGTTGCTGGCGTTGAATGGCGTGTTGCTCATCGAACCCCTG
GCCAGTCTACAGCCGGGGTTCTGGTTGTCGTTTGCGGCGGTCGCGGTGTTGGTGCTGGCATTCAGCGGGCGCCTGGGGCC
GTGGAGCGTCTGGCAAATCTGGACCCGCCCCCAGTGGTTGATCGCAATTGGCTTGTTTCCGGTCCTGCTGGTGTTGGGGT
TGCCCATCAGCCTTAGTGCCCCAGCGGCCAATCTGTTCGCCGTGCCCTGGATCAGCCTGGTAGTACTGCCTTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGTCGGCGAGGGCGTGTTGTGGCTGGCCGGTGGCGCACTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTCGCTGCACAACTGCCGGCCTGGGTACCGGCTGAGGTGCCTTTGAGGTATTGGCTGGTGAGCC
TGGCGGGCGCAGTGATTGTGTTGTTGCCCAAGGGGCTGCCATTCCGAGTGCTGGGTTGGCCCATGCTATTGGTGGCAGTG
TTTCCACCCAGAGATGGGGTGCCCCATGGCCAGATGGAGGTGTTGCAACTGGATGTCGGCCAGGGCCAGGCACTGATCCT
GCGTACCCGCCATCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGATCTGGGCGCGCGCGTGGTCTTGC
CGTCGTTGCAGAAGCTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGCGGTGCC
GCGGCGGTGGCCCGTGGCCTGCCCGTCAAGCGTGTGGTGGGCGGTGAAACCGAAGGGCTGCCGGCGTTTCTCGCTACGCA
ACCCTGCAGGAGTGGTGAACATTGGAAGTGGGACGGCGTGGCATTCGAACTGTGGCAATGGCCTGGTGCTATCGAGGGCA
ATCCGAAATCCTGTGTATTGCAGGTCCAGGCCAACGGCGAACGCCTGCTGCTCACCGGTGATATCGATCGCGCCGCCGAG
CAAGCATTTCTGGCCTCGCCGCTGGCGGTTCCGACCGACTGGCTGCAAGTCCCGCACCATGGCAGCCGCAGTTCTTCGTC
CTGGGCTTTCCTGCAGCGGCTGGCGCCAACCGCGGTGCTGATTTCCCGGGGGCGCGGCAACGCGTTCGGCCATCCGCATC
CGCAGGTGCTGAAGCGCTATCAGGCGCTGGGTAGCCGGGTATATGACAGTGCCGAGCAAGGCGCTGTACGGCTGCGCCTG
GGGGCATTCACGCCACCAACGGTTGCGCGCAGTCAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.031

0.58
  comA Ralstonia pseudosolanacearum GMI1000

34.552

100

0.37