Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMK52_RS18505 Genome accession   NZ_CP125376
Coordinates   4126689..4127324 (+) Length   211 a.a.
NCBI ID   WP_005789055.1    Uniprot ID   A0A7S7MQG5
Organism   Pseudomonas sp. P9_2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4121689..4132324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK52_RS18490 (QMK52_18495) - 4122341..4123699 (+) 1359 WP_032880642.1 sensor histidine kinase -
  QMK52_RS18495 (QMK52_18500) - 4123703..4124218 (-) 516 WP_005789057.1 DUF2062 domain-containing protein -
  QMK52_RS18500 (QMK52_18505) comA 4124354..4126579 (+) 2226 WP_320403181.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMK52_RS18505 (QMK52_18510) exbB 4126689..4127324 (+) 636 WP_005789055.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMK52_RS18510 (QMK52_18515) - 4127321..4127749 (+) 429 WP_005789054.1 ExbD/TolR family protein -
  QMK52_RS18515 (QMK52_18520) lpxK 4127749..4128759 (+) 1011 WP_194438565.1 tetraacyldisaccharide 4'-kinase -
  QMK52_RS18520 (QMK52_18525) - 4128782..4128967 (+) 186 WP_003174668.1 Trm112 family protein -
  QMK52_RS18525 (QMK52_18530) kdsB 4128964..4129728 (+) 765 WP_320403182.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMK52_RS18530 (QMK52_18535) - 4129728..4130192 (+) 465 WP_005789044.1 low molecular weight protein-tyrosine-phosphatase -
  QMK52_RS18535 (QMK52_18540) murB 4130189..4131208 (+) 1020 WP_320403183.1 UDP-N-acetylmuramate dehydrogenase -
  QMK52_RS18540 (QMK52_18545) - 4131278..4131949 (-) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22912.07 Da        Isoelectric Point: 7.3615

>NTDB_id=831577 QMK52_RS18505 WP_005789055.1 4126689..4127324(+) (exbB) [Pseudomonas sp. P9_2]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831577 QMK52_RS18505 WP_005789055.1 4126689..4127324(+) (exbB) [Pseudomonas sp. P9_2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCTGAACACCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AACAGCTCGACAAGCAAAAACTCAAGGAGCTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCGGCTGCCCGGGTTATCCATGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATTGCCGCCATGGCGCCGCTGCTCGGTTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCAGTATTGGCCGGGGGGATTTCCAAGGCATTGATCACCACCGCC
GCCGGCCTGATGGTGGGGATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAGCGTCGCATCGACGAACTGGTGGTTGGCAT
GGAACAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGACGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7MQG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863