Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   TT393_RS08975 Genome accession   NZ_CP139803
Coordinates   1841882..1842619 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain HN257     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1836882..1847619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TT393_RS08960 (TT393_08960) clpC 1837336..1839909 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  TT393_RS08965 (TT393_08965) yfiH 1840039..1840770 (-) 732 WP_023155416.1 purine nucleoside phosphorylase YfiH -
  TT393_RS08970 (TT393_08970) rluD 1840767..1841747 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  TT393_RS08975 (TT393_08975) comL 1841882..1842619 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  TT393_RS08980 (TT393_08980) raiA 1842890..1843231 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  TT393_RS08985 (TT393_08985) pheL 1843335..1843382 (+) 48 WP_010723158.1 phe operon leader peptide -
  TT393_RS08990 (TT393_08990) pheA 1843481..1844641 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  TT393_RS08995 (TT393_08995) tyrA 1844684..1845805 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  TT393_RS09000 (TT393_09000) aroF 1845816..1846886 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  TT393_RS09005 (TT393_09005) yfiL 1847095..1847460 (+) 366 WP_024166617.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=831571 TT393_RS08975 WP_000197686.1 1841882..1842619(+) (comL) [Escherichia coli strain HN257]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=831571 TT393_RS08975 WP_000197686.1 1841882..1842619(+) (comL) [Escherichia coli strain HN257]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376