Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMK52_RS11295 Genome accession   NZ_CP125376
Coordinates   2526322..2527689 (+) Length   455 a.a.
NCBI ID   WP_005791613.1    Uniprot ID   A0A7S7S4R6
Organism   Pseudomonas sp. P9_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2521322..2532689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK52_RS11270 (QMK52_11270) - 2521455..2522165 (-) 711 WP_005791622.1 helix-turn-helix transcriptional regulator -
  QMK52_RS11275 (QMK52_11275) - 2522624..2523400 (+) 777 WP_005791620.1 ferredoxin--NADP reductase -
  QMK52_RS11280 (QMK52_11280) mscL 2523441..2523860 (-) 420 WP_005791618.1 large-conductance mechanosensitive channel protein MscL -
  QMK52_RS11285 (QMK52_11285) katB 2524148..2525689 (+) 1542 WP_005791616.1 catalase KatB -
  QMK52_RS11290 (QMK52_11290) - 2525747..2526286 (+) 540 WP_005791615.1 ankyrin repeat domain-containing protein -
  QMK52_RS11295 (QMK52_11295) radA 2526322..2527689 (+) 1368 WP_005791613.1 DNA repair protein RadA Machinery gene
  QMK52_RS11300 (QMK52_11300) - 2527757..2528125 (-) 369 WP_005791611.1 PilZ domain-containing protein -
  QMK52_RS11305 (QMK52_11305) - 2528299..2530365 (+) 2067 WP_005791609.1 carbon starvation CstA family protein -
  QMK52_RS11310 (QMK52_11310) - 2530381..2530578 (+) 198 WP_003194308.1 YbdD/YjiX family protein -
  QMK52_RS11315 (QMK52_11315) yjiA 2530768..2531727 (+) 960 WP_005791606.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48763.28 Da        Isoelectric Point: 6.8987

>NTDB_id=831570 QMK52_RS11295 WP_005791613.1 2526322..2527689(+) (radA) [Pseudomonas sp. P9_2]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=831570 QMK52_RS11295 WP_005791613.1 2526322..2527689(+) (radA) [Pseudomonas sp. P9_2]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGTGGTGCCGCAGCTCCTACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCACAGATCAAGACCCTGGCCGAGGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACCGCGTCCGGCGAACTG
GACCGCGTACTTGGCGGTGGCCTGGTCGATGGTTCGGTGGTGCTGATCGGCGGTGACCCGGGCATCGGCAAGTCGACCAT
CCTCTTGCAAACCCTGTGCAGCATCGCCAGCCGTATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAACAGCAAGTGG
CCATGCGCGCCCGCCGTTTGGGCCTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGGATCGAAAAGCCCAAGGTCATGGTAATTGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGCTGTTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGTTGGAGCACATGGTGGATACCGTGCTGTATTTCGAA
GGTGAGTCCGATGGCCGCCTGCGTTTGCTGCGGGCGGTAAAAAACCGCTTTGGCGCCGTGAACGAGCTGGGTGTGTTCGC
CATGACTGACCGTGGACTGAAAGAAGTCTCCAACCCCTCGGCAATTTTTCTCACTCGGGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTGATGGCGACGTGGGAGGGTACCCGGCCCATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCGCGGCGGGTCACGCTGGGCCTGGACCAGAACCGTCTGGCGATGTTGCTGGCGGTATTGCACCGTCACGGCGGCAT
TCCGACCCATGACCAGGATGTTTTCCTTAACGTAGTGGGCGGGGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGCTGCCCCATGATCTGCTGGTGTTTGGTGAGGTCGGCCTGTCGGGC
GAAGTCCGCCCGGTGCCCAGTGGGCAGGAGCGGTTGAAGGAGGCGGCCAAGCATGGGTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGGCAGGTTTGCAGGTGATTGGGGTGACGCGCCTGGAGCAGGCGTTGGATGCACTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7S4R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.059

100

0.475
  radA Streptococcus mitis NCTC 12261

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47