Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   HX0037_RS12115 Genome accession   NZ_CP139782
Coordinates   2508958..2510943 (+) Length   661 a.a.
NCBI ID   WP_015387640.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HX0037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2503958..2515943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX0037_RS12100 - 2505049..2505672 (-) 624 WP_015387638.1 TetR/AcrR family transcriptional regulator -
  HX0037_RS12105 - 2505744..2508245 (-) 2502 WP_025853529.1 PEP/pyruvate-binding domain-containing protein -
  HX0037_RS12110 - 2508546..2508782 (+) 237 WP_003151438.1 CsbA family protein -
  HX0037_RS12115 uvrB 2508958..2510943 (+) 1986 WP_015387640.1 excinuclease ABC subunit UvrB Machinery gene
  HX0037_RS12120 uvrA 2510951..2513824 (+) 2874 WP_071543379.1 excinuclease ABC subunit UvrA Machinery gene
  HX0037_RS12125 - 2513873..2514112 (-) 240 WP_003151443.1 hypothetical protein -
  HX0037_RS12130 - 2514311..2514637 (+) 327 WP_003151444.1 hypothetical protein -
  HX0037_RS12135 - 2514662..2515759 (+) 1098 WP_070082446.1 DUF4097 family beta strand repeat-containing protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76466.25 Da        Isoelectric Point: 5.1932

>NTDB_id=831412 HX0037_RS12115 WP_015387640.1 2508958..2510943(+) (uvrB) [Bacillus amyloliquefaciens strain HX0037]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITNSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=831412 HX0037_RS12115 WP_015387640.1 2508958..2510943(+) (uvrB) [Bacillus amyloliquefaciens strain HX0037]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
CATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGTGCGACAGGGACGGGCAAAACCTTTACCGTGTCCAATCTGATTA
AAGAAGTGAATAAACCGACACTGGTCATTGCCCATAACAAAACCCTTGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTCCCGAACAACGCTGTCGAATATTTTGTCAGCTATTACGATTACTATCAGCCGGAGGCGTACGTGCCTCAAACGGATAC
TTTTATAGAGAAAGACGCAAGCATTAATGATGAAATTGATAAACTGAGACACTCCGCGACATCCTCTCTGTTTGAACGGA
GAGATGTCATTATTATCGCGAGTGTGTCATGCATATACGGCCTCGGTTCGCCTGAAGAATACCGGGAAATGGTCGTGTCG
CTCAGACCGGAAATGGAGATTGAGCGGAACGAGCTTCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGCGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTCCCGGCTTCCCGTGACGAACATTGTATCAGAG
TGGAATTTTTCGGAGACGAAATTGAGCGGATCAGGGAGGTCGACGCTTTGACCGGAGAAATTCTCGGCGACCGTGACCAT
GTCGCGATTTTCCCGGCTTCCCACTTCGTCACCCGGGCGGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTGAAAGTGATGCGCGAAAACGGCAAGCTCCTTGAAGCGCAGCGGCTTGAGCAGCGGACGAGGTATGATC
TTGAAATGATGCGGGAAATGGGTTTTTGCTCAGGGATCGAGAACTATTCAAGACATTTGACGCTCCGTCCTCCTGGTTCT
ACGCCGTATACGCTGCTTGATTATTTTCCGGACGATTTTATGATTGTCGTTGATGAATCACATGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCGAGAAAACAGGTGCTAGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTCCGATTCGAGGAATTTGAAAAGCATATGCACAATATCGTGTACGTGTCGGCGACTCCGGGACCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGACCGACGGGACTCCTCGATCCCCTCATTGACGTCCGTCCGAT
CGAAGGACAGATTGATGATCTGATCGGCGAGATTCAGGCGAGGATTGAACGGAATGAACGCGTTCTCGTGACGACTTTAA
CGAAAAAAATGTCAGAGGATCTGACCGATTATCTCAAAGAAATCGGCATCAAGGTCAATTATCTGCATTCCGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGATCTCCGCCTCGGAAAACATGATGTGTTAATCGGCATCAACCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTCGATGCGGATAAAGAAGGCTTCCTCCGTTCTGAACGTTCGC
TGATTCAGACGATCGGACGGGCGGCCAGAAACGCGGAAGGCCGCGTCATCATGTATGCCGATAAAATCACGAATTCGATG
GAAATCGCGATTAATGAAACGAAGCGCCGCCGGGAACAGCAGGAGCGCTTTAACGAAATTCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCGC
CTAAACTGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAGCGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTTAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(12-130)

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

UvrB/uvrC motif (UVR)

(626-659)

Ultra-violet resistance protein B (UvrB)

(551-593)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae R6

70.32

99.395

0.699
  uvrB Streptococcus pneumoniae D39

70.32

99.395

0.699